Factsheet for PGSC0003DMT400066610

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
extracellular 1
cytosol 2
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g108190.2.1	Tomato	plastid	95.68	95.68
VIT_03s0063g00530.t01	Wine grape	cytosol	61.62	62.64
KRH50269	Soybean	mitochondrion	57.3	57.3
KRH71148	Soybean	cytosol	55.14	55.14
HORVU5Hr1G068490.1	Barley	cytosol	23.24	50.0
CDY66855	Canola	plastid	50.81	49.74
PGSC0003DMT400089961	Potato	cytosol	46.49	49.71
AT2G15680.1	Thale cress	plastid	49.73	49.2
Bra039845.1-P	Field mustard	plastid	49.73	48.68
CDY37233	Canola	plastid	49.73	48.68
PGSC0003DMT400026987	Potato	cytosol	32.97	42.07
EER96860	Sorghum	cytosol, mitochondrion	41.08	41.3
PGSC0003DMT400078654	Potato	cytosol	34.59	41.03
Os09t0458700-01	Rice	cytosol, mitochondrion	40.0	40.0
TraesCS5B01G237500.1	Wheat	mitochondrion	38.38	38.8
TraesCS5D01G246000.1	Wheat	mitochondrion	38.38	38.8
GSMUA_Achr9P27060_001	Banana	plastid	40.54	38.07
TraesCS5A01G238900.1	Wheat	mitochondrion	37.3	37.7
Zm00001d020722_P001	Maize	cytosol, mitochondrion	37.3	37.5
PGSC0003DMT400074098	Potato	cytosol	30.81	37.01
PGSC0003DMT400014742	Potato	cytosol	31.35	35.37
PGSC0003DMT400071189	Potato	cytosol	27.03	33.56
PGSC0003DMT400018016	Potato	cytosol	27.03	33.33
PGSC0003DMT400025178	Potato	cytosol	30.81	32.76
PGSC0003DMT400033250	Potato	cytosol	30.27	29.17
PGSC0003DMT400075801	Potato	plastid	30.27	28.87
PGSC0003DMT400086334	Potato	cytosol	26.49	27.68
PGSC0003DMT400076709	Potato	mitochondrion	29.19	25.59
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	26.49	23.9
PGSC0003DMT400069195	Potato	golgi, plastid	28.11	23.74
PGSC0003DMT400027581	Potato	cytosol, plastid	27.57	23.61
PGSC0003DMT400079359	Potato	extracellular, golgi	29.73	23.5
PGSC0003DMT400071219	Potato	cytosol, plastid	24.86	23.12

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:102596749	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	InterPro:IPR002048	UniProt:M1CFW1	PFAM:PF13499	EnsemblPlantsGene:PGSC0003DMG402025892
PGSC:PGSC0003DMG402025892	EnsemblPlants:PGSC0003DMT400066610	PRINTS:PR01697	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR10891
PANTHER:PTHR10891:SF620	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0002963B2B	RefSeq:XP_006346428.1	:

Description

Polcalcin Jun o [Source:PGSC_GENE;Acc:PGSC0003DMG402025892]

Coordinates

chr1:-:84600722..84601279

Molecular Weight (calculated)

21167.2 Da

IEP (calculated)

6.027

GRAVY (calculated)

-0.612

Length

185 amino acids

Sequence
(BLAST)

001: MPNPSFLDFQ YNLSKRSFLR KPTRMFTRER QNSCSLPVYQ TSVDDLKKVF DRFDSNKDGN ISPEEYKAIL KAMGKKNLLT REVQKIFDVA DADGDGFIDF
101: NEFVEVQKKE GGVKTTDLQR AFHTFDKDGD GKISVQEVYE LQKGLGQRCS LQDCRKMVKA VDANGDGVID LDEFVTMMTR TMTLC

Best Arabidopsis Sequence Match ( AT2G15680.1 )
(BLAST)

001: MSNVSFLELQ YKLSKNKMLR KPSRMFSRDR QSSGLSSPGP GGFSQPSVNE MRRVFSRFDL DKDGKISQTE YKVVLRALGQ ERAIEDVPKI FKAVDLDGDG
101: FIDFREFIDA YKRSGGIRSS DIRNSFWTFD LNGDGKISAE EVMSVLWKLG ERCSLEDCNR MVRAVDADGD GLVNMEEFIK MMSSNNV

Arabidopsis Description

CML30CML30 [Source:UniProtKB/TrEMBL;Acc:A0A178VPG8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.