Factsheet for PGSC0003DMT400025178

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005370.2.1	Tomato	cytosol	95.4	96.51
PGSC0003DMT400075801	Potato	plastid	68.39	61.34
KRH75577	Soybean	cytosol	52.87	60.53
KRH60410	Soybean	cytosol, plastid	64.94	60.11
KRH37459	Soybean	cytosol	34.48	58.82
Bra032785.1-P	Field mustard	cytosol	43.1	58.59
KRH49632	Soybean	cytosol, mitochondrion, plastid	58.05	55.49
Bra012497.1-P	Field mustard	cytosol	57.47	54.35
CDY03874	Canola	cytosol	57.47	54.35
CDY40786	Canola	cytosol	57.47	54.35
AT1G24620.1	Thale cress	cytosol	56.32	52.69
CDX84967	Canola	cytosol	56.9	52.38
Bra010974.1-P	Field mustard	cytosol	55.75	51.87
CDY36129	Canola	cytosol	55.75	51.87
CDY27574	Canola	cytosol	56.9	51.83
PGSC0003DMT400026987	Potato	cytosol	42.53	51.03
PGSC0003DMT400078654	Potato	cytosol	43.1	48.08
Os01t0949500-01	Rice	plasma membrane	48.85	45.95
EES04217	Sorghum	cytosol, mitochondrion, plastid	47.7	43.92
TraesCS3B01G538300.1	Wheat	cytosol, plastid	46.55	42.63
TraesCS3B01G536200.1	Wheat	cytosol, plastid	46.55	42.63
TraesCS3D01G484900.1	Wheat	cytosol, mitochondrion	45.4	42.47
TraesCS3D01G483200.1	Wheat	cytosol, plastid	46.55	42.41
Zm00001d042107_P001	Maize	mitochondrion	47.13	42.27
HORVU3Hr1G107090.2	Barley	cytosol, plastid	45.98	41.88
TraesCS3A01G488400.1	Wheat	cytosol, plastid	45.98	41.88
PGSC0003DMT400071189	Potato	cytosol	35.06	40.94
PGSC0003DMT400018016	Potato	cytosol	34.48	40.0
Zm00001d009985_P001	Maize	cytosol, mitochondrion, plastid	42.53	39.15
HORVU1Hr1G057410.1	Barley	mitochondrion	42.53	39.15
TraesCS1D01G239000.1	Wheat	mitochondrion	41.95	38.62
TraesCS1B01G250900.1	Wheat	mitochondrion	41.95	38.62
TraesCS1A01G238800.1	Wheat	mitochondrion	41.95	38.62
PGSC0003DMT400014742	Potato	cytosol	36.21	38.41
PGSC0003DMT400074098	Potato	cytosol	32.76	37.01
EES19444	Sorghum	plastid	41.95	36.68
PGSC0003DMT400033250	Potato	cytosol	40.23	36.46
CDY24421	Canola	endoplasmic reticulum, golgi	55.75	35.79
Os05t0380900-01	Rice	cytosol, mitochondrion	40.8	35.32
Zm00001d038061_P001	Maize	mitochondrion	41.38	35.29
PGSC0003DMT400086334	Potato	cytosol	35.63	35.03
PGSC0003DMT400089961	Potato	cytosol	33.33	33.53
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	36.78	31.22
PGSC0003DMT400066610	Potato	plastid	32.76	30.81
PGSC0003DMT400076709	Potato	mitochondrion	37.36	30.81
PGSC0003DMT400079359	Potato	extracellular, golgi	41.38	30.77
PGSC0003DMT400069195	Potato	golgi, plastid	36.21	28.77
PGSC0003DMT400027581	Potato	cytosol, plastid	34.48	27.78
PGSC0003DMT400071219	Potato	cytosol, plastid	30.46	26.63

Protein Annotations

EnsemblPlants:PGSC0003DMT400025178	EnsemblPlantsGene:PGSC0003DMG400009730	EntrezGene:102603618	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10891
PANTHER:PTHR10891:SF738	PFAM:PF13499	PFscan:PS50222	PGSC:PGSC0003DMG400009730	RefSeq:XP_006367611.1	ScanProsite:PS00018
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI000294DD65	UniProt:M1AL49	MapMan:35.1	:

Description

Calcium-binding pollen allergen [Source:PGSC_GENE;Acc:PGSC0003DMG400009730]

Coordinates

chr1:+:811216..812237

Molecular Weight (calculated)

19282.8 Da

IEP (calculated)

3.978

GRAVY (calculated)

-0.389

Length

174 amino acids

Sequence
(BLAST)

001: MGLIKSLFNR KKKNDPTPAN SPPVNSPIMI EEELQQVFNK FDINGDGKIS FSELGFIMAS LGTAVTEEES IEMINEVDGD GDGFIDLSEF IELNTKNIDS
101: DEVTENLKDA FSVFDVDKNG SISAEELQKV MKSTGEECSL DECRKMIGGV DCDGDGMIDF EEFKVMMIGK RKEL

Best Arabidopsis Sequence Match ( AT1G24620.1 )
(BLAST)

001: MFNKNQGSNG GSSSNVGIGA DSPYLQKARS GKTEIRELEA VFKKFDVNGD GKISSKELGA IMTSLGHEVP EEELEKAITE IDRKGDGYIN FEEFVELNTK
101: GMDQNDVLEN LKDAFSVYDI DGNGSISAEE LHEVLRSLGD ECSIAECRKM IGGVDKDGDG TIDFEEFKIM MTMGSRRDNV MGGGPR

Arabidopsis Description

CML25Probable calcium-binding protein CML25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.