CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
extracellular 1
mitochondrion 3
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038061_P001	Maize	mitochondrion	88.44	86.27
Zm00001d009985_P001	Maize	cytosol, mitochondrion, plastid	80.9	85.19
TraesCS1B01G250900.1	Wheat	mitochondrion	70.85	74.6
HORVU1Hr1G057410.1	Barley	mitochondrion	70.85	74.6
TraesCS1D01G239000.1	Wheat	mitochondrion	70.35	74.07
TraesCS1A01G238800.1	Wheat	mitochondrion	70.35	74.07
Os05t0380900-01	Rice	cytosol, mitochondrion	69.35	68.66
EES04217	Sorghum	cytosol, mitochondrion, plastid	62.81	66.14
KRH75577	Soybean	cytosol	36.18	47.37
KRH60410	Soybean	cytosol, plastid	42.71	45.21
EES19251	Sorghum	cytosol	38.19	42.46
Solyc01g005370.2.1	Tomato	cytosol	36.68	42.44
PGSC0003DMT400025178	Potato	cytosol	36.68	41.95
KRH49632	Soybean	cytosol, mitochondrion, plastid	38.19	41.76
Solyc04g008000.2.1	Tomato	cytosol, plastid	39.7	41.36
PGSC0003DMT400075801	Potato	plastid	39.7	40.72
CDY03874	Canola	cytosol	36.18	39.13
CDY40786	Canola	cytosol	36.18	39.13
Bra032785.1-P	Field mustard	cytosol	25.13	39.06
OQU78964	Sorghum	cytosol	32.16	38.79
Bra012497.1-P	Field mustard	cytosol	35.68	38.59
KRH37459	Soybean	cytosol	19.6	38.24
AT1G24620.1	Thale cress	cytosol	35.18	37.63
CDX84967	Canola	cytosol	34.67	36.51
Bra010974.1-P	Field mustard	cytosol	34.17	36.36
CDY36129	Canola	cytosol	34.17	36.36
CDY27574	Canola	cytosol	34.67	36.13
EES00360	Sorghum	cytosol	32.66	31.55
EER96860	Sorghum	cytosol, mitochondrion	27.64	29.89
EES11048	Sorghum	plastid	35.68	29.83
EER92319	Sorghum	cytosol	27.14	28.72
KXG39446	Sorghum	plastid	26.63	27.75
EER87935	Sorghum	endoplasmic reticulum, vacuole	33.67	27.35
EER97743	Sorghum	plastid	27.14	27.14
EES02048	Sorghum	plastid	24.62	25.65
CDY24421	Canola	endoplasmic reticulum, golgi	33.67	24.72
EES16521	Sorghum	plastid	26.13	24.3
KXG27695	Sorghum	plastid	23.62	23.86

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	EntrezGene:8076822	UniProt:C5YXC5	EnsemblPlants:EES19444	ProteinID:EES19444
ProteinID:EES19444.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:IPR002048	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR10891
PANTHER:PTHR10891:SF635	SMART:SM00054	EnsemblPlantsGene:SORBI_3009G120800	SUPFAM:SSF47473	unigene:Sbi.6039	UniParc:UPI0001A88A34
RefSeq:XP_002441014.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:47126421..47127618

Molecular Weight (calculated)

20587.1 Da

IEP (calculated)

4.775

GRAVY (calculated)

-0.179

Length

199 amino acids

Sequence
(BLAST)

001: MGKVRSFFSR SRSGGSKRGA AGAPGASSPF SSAPPSPLPR RSPSAARAAD ETERVFRKFD ANGDGQISRC ELAALFASVG HAATDDEVSR MMEEADADGD
101: GCISLTEFAA LMDAASADAA AVEEDLRHAF MVFDADGNGL ITPAELARVM RGLGESATVA QCRRMIQGVD RNGDGLVSFD EFKLMMAAGG GGFGRIGAA

Best Arabidopsis Sequence Match ( AT1G24620.1 )
(BLAST)

001: MFNKNQGSNG GSSSNVGIGA DSPYLQKARS GKTEIRELEA VFKKFDVNGD GKISSKELGA IMTSLGHEVP EEELEKAITE IDRKGDGYIN FEEFVELNTK
101: GMDQNDVLEN LKDAFSVYDI DGNGSISAEE LHEVLRSLGD ECSIAECRKM IGGVDKDGDG TIDFEEFKIM MTMGSRRDNV MGGGPR

Arabidopsis Description

CML25Probable calcium-binding protein CML25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYK2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.