CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029028_P001	Maize	plastid	92.67	94.15
EER92319	Sorghum	cytosol	89.53	90.96
Os03t0331700-02	Rice	plasma membrane	86.39	86.84
Zm00001d047535_P001	Maize	plastid	82.72	84.49
TraesCS4D01G174400.1	Wheat	plastid	82.72	83.6
TraesCS4B01G172400.1	Wheat	plastid	82.72	83.6
TraesCS4A01G132300.1	Wheat	plastid	83.25	83.25
HORVU4Hr1G050990.1	Barley	plastid	83.77	82.9
GSMUA_Achr8P01570_001	Banana	cytosol	64.92	67.03
EER97743	Sorghum	plastid	69.63	66.83
AT5G44460.1	Thale cress	cytosol	52.88	55.8
Bra033745.1-P	Field mustard	cytosol	52.36	54.95
CDX94789	Canola	cytosol	51.83	54.4
CDY49013	Canola	cytosol	51.83	54.4
CDX94006	Canola	cytosol	52.36	53.76
CDX79002	Canola	cytosol	52.88	53.72
Bra013470.1-P	Field mustard	cytosol	52.88	53.72
CDY14927	Canola	cytosol	50.79	53.3
Bra039511.1-P	Field mustard	cytosol	50.79	53.3
CDY31433	Canola	cytosol, plastid	51.31	53.26
Bra020916.1-P	Field mustard	cytosol, plastid	50.79	52.72
CDX76451	Canola	cytosol, plastid	50.79	52.72
CDX82773	Canola	cytosol	51.83	51.83
AT4G20780.1	Thale cress	cytosol	51.83	51.83
Solyc10g074740.1.1	Tomato	cytosol, plastid	52.88	50.75
VIT_08s0056g00290.t01	Wine grape	cytosol, mitochondrion	50.26	50.0
PGSC0003DMT400071219	Potato	cytosol, plastid	51.83	49.75
CDX96968	Canola	cytosol	50.26	49.74
KRH40630	Soybean	mitochondrion	47.12	49.18
OQU78964	Sorghum	cytosol	35.08	40.61
CDX98672	Canola	cytosol	52.36	39.37
Bra038801.1-P	Field mustard	cytosol	52.36	38.31
EES04217	Sorghum	cytosol, mitochondrion, plastid	31.41	31.75
EES11048	Sorghum	plastid	36.65	29.41
EES19251	Sorghum	cytosol	27.23	29.05
EES19444	Sorghum	plastid	27.75	26.63
EER96860	Sorghum	cytosol, mitochondrion	25.65	26.63
EES02048	Sorghum	plastid	25.13	25.13
EER87935	Sorghum	endoplasmic reticulum, vacuole	30.89	24.08
EES00360	Sorghum	cytosol	25.65	23.79
KXG27695	Sorghum	plastid	24.08	23.35
EES16521	Sorghum	plastid	25.65	22.9

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	UniProt:A0A1B6QNE6	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	EnsemblPlants:KXG39446	ProteinID:KXG39446
ProteinID:KXG39446.1	PFAM:PF13405	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR45003
PANTHER:PTHR45003:SF1	SMART:SM00054	EnsemblPlantsGene:SORBI_3001G383700	SUPFAM:SSF47473	UniParc:UPI0001FCC800	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:67116549..67122800

Molecular Weight (calculated)

20465.1 Da

IEP (calculated)

4.253

GRAVY (calculated)

-0.248

Length

191 amino acids

Sequence
(BLAST)

001: MENAAGAPAP AITKPSLSKK PSPSFRLRNG SLNALRLRRV FDLFDRNGDG EITLDEMASA LDSLGLGADR SGLEAAVGGY IPAGAAGLRF ENFESLHRAL
101: GDALFGPIPE EVPEDDDEGD MKEAFRVFDE DGDGFISAAE LQAVLKKLGL PEARSLASVQ EMICNVDRNC DGRVDFGEFK NMMQGITVWG A

Best Arabidopsis Sequence Match ( AT4G20780.1 )
(BLAST)

001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S

Arabidopsis Description

CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.