Factsheet for Solyc10g074740.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g009340.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20780.1	Solyc10g009340.1.1	AT2G46600.1	19720824

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071219	Potato	cytosol, plastid	96.98	96.98
AT5G44460.1	Thale cress	cytosol	59.3	65.19
CDY49013	Canola	cytosol	58.79	64.29
Bra033745.1-P	Field mustard	cytosol	58.79	64.29
CDX94789	Canola	cytosol	58.79	64.29
CDY31433	Canola	cytosol, plastid	58.79	63.59
AT4G20780.1	Thale cress	cytosol	60.8	63.35
Bra039511.1-P	Field mustard	cytosol	57.79	63.19
CDY14927	Canola	cytosol	57.79	63.19
Bra020916.1-P	Field mustard	cytosol, plastid	58.29	63.04
CDX76451	Canola	cytosol, plastid	58.29	63.04
CDX94006	Canola	cytosol	58.79	62.9
CDX82773	Canola	cytosol	59.3	61.78
KRH40630	Soybean	mitochondrion	56.78	61.75
VIT_08s0056g00290.t01	Wine grape	cytosol, mitochondrion	59.3	61.46
CDX79002	Canola	cytosol	57.79	61.17
Bra013470.1-P	Field mustard	cytosol	57.79	61.17
CDX96968	Canola	cytosol	57.29	59.07
GSMUA_Achr8P01570_001	Banana	cytosol	51.76	55.68
Os03t0331700-02	Rice	plasma membrane	51.76	54.21
Zm00001d029028_P001	Maize	plastid	50.25	53.19
KXG39446	Sorghum	plastid	50.75	52.88
TraesCS4D01G174400.1	Wheat	plastid	49.75	52.38
EER92319	Sorghum	cytosol	49.25	52.13
TraesCS4B01G172400.1	Wheat	plastid	49.25	51.85
TraesCS4A01G132300.1	Wheat	plastid	49.75	51.83
Zm00001d047535_P001	Maize	plastid	48.24	51.34
EER97743	Sorghum	plastid	51.26	51.26
TraesCS7A01G306000.1	Wheat	plastid	50.25	51.02
TraesCS2B01G120900.1	Wheat	plastid	48.74	50.79
TraesCS2A01G103600.1	Wheat	plastid	48.74	50.79
HORVU4Hr1G050990.1	Barley	plastid	49.25	50.78
TraesCS7D01G302700.1	Wheat	plastid	49.75	50.51
Zm00001d022430_P001	Maize	cytosol, plastid	50.75	50.5
Os08t0144100-01	Rice	plasma membrane	49.25	50.0
Zm00001d007181_P001	Maize	plastid	50.75	49.75
TraesCS2D01G103400.1	Wheat	plastid	47.74	49.74
HORVU7Hr1G072770.1	Barley	plastid	49.25	49.49
Os07t0681400-01	Rice	cytosol	48.74	49.24
TraesCS7B01G206200.1	Wheat	plastid	48.74	48.99
CDX98672	Canola	cytosol	58.79	46.06
TraesCS5D01G348900.1	Wheat	cytosol	37.19	45.4
Bra038801.1-P	Field mustard	cytosol	59.3	45.21
TraesCS5A01G343000.1	Wheat	cytosol, mitochondrion	37.19	45.12
TraesCS5B01G342800.1	Wheat	cytosol	36.18	44.44
HORVU5Hr1G085800.2	Barley	cytosol	37.19	42.29
Solyc11g044920.1.1	Tomato	cytosol	24.12	39.67
Os05t0312600-01	Rice	cytosol, plastid	39.2	39.59
Solyc06g083000.1.1	Tomato	cytosol	28.64	38.26
Solyc05g050750.1.1	Tomato	cytosol, unclear	28.64	38.0
Solyc09g055880.1.1	Tomato	cytosol	28.64	38.0
Solyc02g063350.1.1	Tomato	cytosol	25.13	34.48
Solyc06g068960.1.1	Tomato	endoplasmic reticulum, unclear	25.13	32.47
Solyc01g005370.2.1	Tomato	cytosol	26.63	30.81
Solyc02g091500.1.1	Tomato	cytosol	24.12	30.77
Solyc03g118810.1.1	Tomato	cytosol	25.13	30.49
Solyc04g008000.2.1	Tomato	cytosol, plastid	27.14	28.27
Solyc02g065000.1.1	Tomato	cytosol	23.62	27.17
Solyc07g007950.1.1	Tomato	endoplasmic reticulum, extracellular, golgi	29.65	26.58
Solyc01g108190.2.1	Tomato	plastid	23.62	25.41
Solyc10g079420.1.1	Tomato	nucleus, plastid	20.6	20.0
Solyc04g018110.1.1	Tomato	plastid	23.62	19.42

Protein Annotations

EnsemblPlants:Solyc10g074740.1.1	EnsemblPlantsGene:Solyc10g074740.1	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR45003	PANTHER:PTHR45003:SF2
PFAM:PF13202	PFAM:PF13499	PFscan:PS50222	ScanProsite:PS00018	SEG:seg	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI0002769A55	UniProt:K4D1R6	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr10:+:58372988..58373587

Molecular Weight (calculated)

22552.5 Da

IEP (calculated)

4.289

GRAVY (calculated)

-0.438

Length

199 amino acids

Sequence
(BLAST)

001: MGSVQDESKD EFKQSLTRGK LKPSSSSSFR LRSPSLNSIR LRRIFDVFDR NHDCLISVEE LSQALNLLGL DADLSEIESM VKSYIKPENT GLRFEDFEAL
101: HRSLNDVFFG SKCEDKLGLN SDPAQDELDL KEAFDVFDEN GDGFISAKEL QVVLEKLGLP EGSEIDRVEM MISSVDQDHD GRVDFFEFKD MMRTVIVPS

Best Arabidopsis Sequence Match ( AT4G20780.1 )
(BLAST)

001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S

Arabidopsis Description

CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.