Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G065900.1 | |
| TraesCS6B01G088900.1 | |
| TraesCSU01G118100.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G20780.1 | TraesCS6A01G065900.1 | AT2G46600.1 | 19720824 |
| AT4G20780.1 | TraesCS6B01G088900.1 | AT2G46600.1 | 19720824 |
| AT4G20780.1 | TraesCSU01G118100.1 | AT2G46600.1 | 19720824 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G103600.1 | Wheat | plastid | 98.95 | 98.95 |
| TraesCS2D01G103400.1 | Wheat | plastid | 97.91 | 97.91 |
| Os07t0681400-01 | Rice | cytosol | 84.29 | 81.73 |
| Zm00001d022430_P001 | Maize | cytosol, plastid | 79.06 | 75.5 |
| EER97743 | Sorghum | plastid | 78.53 | 75.38 |
| Zm00001d007181_P001 | Maize | plastid | 79.58 | 74.88 |
| TraesCS7B01G206200.1 | Wheat | plastid | 73.82 | 71.21 |
| TraesCS4B01G172400.1 | Wheat | plastid | 69.63 | 70.37 |
| GSMUA_Achr8P01570_001 | Banana | cytosol | 60.73 | 62.7 |
| AT5G44460.1 | Thale cress | cytosol | 50.26 | 53.04 |
| Bra033745.1-P | Field mustard | cytosol | 49.74 | 52.2 |
| CDY49013 | Canola | cytosol | 49.21 | 51.65 |
| CDX94789 | Canola | cytosol | 49.21 | 51.65 |
| TraesCS5B01G342800.1 | Wheat | cytosol | 42.93 | 50.62 |
| KRH40630 | Soybean | mitochondrion | 48.17 | 50.27 |
| CDY14927 | Canola | cytosol | 47.64 | 50.0 |
| Bra039511.1-P | Field mustard | cytosol | 47.64 | 50.0 |
| CDX79002 | Canola | cytosol | 48.69 | 49.47 |
| Bra013470.1-P | Field mustard | cytosol | 48.69 | 49.47 |
| CDX94006 | Canola | cytosol | 48.17 | 49.46 |
| CDY31433 | Canola | cytosol, plastid | 47.64 | 49.46 |
| AT4G20780.1 | Thale cress | cytosol | 49.21 | 49.21 |
| VIT_08s0056g00290.t01 | Wine grape | cytosol, mitochondrion | 49.21 | 48.96 |
| Bra020916.1-P | Field mustard | cytosol, plastid | 47.12 | 48.91 |
| CDX76451 | Canola | cytosol, plastid | 47.12 | 48.91 |
| Solyc10g074740.1.1 | Tomato | cytosol, plastid | 50.79 | 48.74 |
| PGSC0003DMT400071219 | Potato | cytosol, plastid | 50.79 | 48.74 |
| CDX82773 | Canola | cytosol | 48.69 | 48.69 |
| CDX96968 | Canola | cytosol | 47.12 | 46.63 |
| TraesCS5B01G134200.1 | Wheat | cytosol | 19.37 | 41.11 |
| CDX98672 | Canola | cytosol | 48.69 | 36.61 |
| Bra038801.1-P | Field mustard | cytosol | 48.69 | 35.63 |
| TraesCS2B01G367500.1 | Wheat | plastid | 37.7 | 33.64 |
| TraesCS3B01G536200.1 | Wheat | cytosol, plastid | 32.98 | 33.16 |
| TraesCS3B01G538300.1 | Wheat | cytosol, plastid | 32.98 | 33.16 |
| TraesCS1B01G148000.1 | Wheat | cytosol | 29.32 | 32.56 |
| TraesCS1B01G250900.1 | Wheat | mitochondrion | 29.32 | 29.63 |
| TraesCS3B01G045500.1 | Wheat | cytosol | 27.23 | 27.81 |
| TraesCS7B01G034000.1 | Wheat | endoplasmic reticulum | 31.94 | 26.07 |
| TraesCS5B01G237500.1 | Wheat | mitochondrion | 24.08 | 25.14 |
| TraesCS3B01G536600.1 | Wheat | nucleus, plastid | 23.56 | 22.84 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G120900.1 | EnsemblPlantsGene:TraesCS2B01G120900 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR45003 | PFAM:PF13405 |
| PFAM:PF13499 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 | SUPFAM:SSF47473 |
| TIGR:cd00051 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:88434451..88435026
Molecular Weight (calculated)
20346.8 Da
IEP (calculated)
4.310
GRAVY (calculated)
-0.301
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGEHQQSQG AAKALSKGSP SPSFRLRNGS LNAVRLRRVF DMFDRNGDGQ ITVDELAQAL DALGLEADRA SLAATVGAHV PPGASGLRFE DFEGLHRALG
101: DALFGALADD AEEGGAGGQN EEEMREAFKV FDVDGDGFIS ASELQEVLKK LGMPEASSLA NVREMICNVD RDSDGRVDFG EFKIMMQGIN V
101: DALFGALADD AEEGGAGGQN EEEMREAFKV FDVDGDGFIS ASELQEVLKK LGMPEASSLA NVREMICNVD RDSDGRVDFG EFKIMMQGIN V
001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S
Arabidopsis Description
CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.