Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G065900.1 | |
| TraesCS6B01G088900.1 | |
| TraesCSU01G118100.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G20780.1 | TraesCS6A01G065900.1 | AT2G46600.1 | 19720824 |
| AT4G20780.1 | TraesCS6B01G088900.1 | AT2G46600.1 | 19720824 |
| AT4G20780.1 | TraesCSU01G118100.1 | AT2G46600.1 | 19720824 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G103400.1 | Wheat | plastid | 98.95 | 98.95 |
| TraesCS2B01G120900.1 | Wheat | plastid | 98.95 | 98.95 |
| Os07t0681400-01 | Rice | cytosol | 84.82 | 82.23 |
| Zm00001d022430_P001 | Maize | cytosol, plastid | 80.1 | 76.5 |
| EER97743 | Sorghum | plastid | 79.06 | 75.88 |
| Zm00001d007181_P001 | Maize | plastid | 80.1 | 75.37 |
| TraesCS7A01G306000.1 | Wheat | plastid | 73.3 | 71.43 |
| TraesCS4A01G132300.1 | Wheat | plastid | 69.11 | 69.11 |
| GSMUA_Achr8P01570_001 | Banana | cytosol | 61.26 | 63.24 |
| AT5G44460.1 | Thale cress | cytosol | 50.26 | 53.04 |
| Bra033745.1-P | Field mustard | cytosol | 49.74 | 52.2 |
| TraesCS5A01G343000.1 | Wheat | cytosol, mitochondrion | 44.5 | 51.83 |
| CDX94789 | Canola | cytosol | 49.21 | 51.65 |
| CDY49013 | Canola | cytosol | 49.21 | 51.65 |
| KRH40630 | Soybean | mitochondrion | 48.17 | 50.27 |
| CDY14927 | Canola | cytosol | 47.64 | 50.0 |
| Bra039511.1-P | Field mustard | cytosol | 47.64 | 50.0 |
| CDX79002 | Canola | cytosol | 48.69 | 49.47 |
| Bra013470.1-P | Field mustard | cytosol | 48.69 | 49.47 |
| CDX94006 | Canola | cytosol | 48.17 | 49.46 |
| CDY31433 | Canola | cytosol, plastid | 47.64 | 49.46 |
| AT4G20780.1 | Thale cress | cytosol | 49.21 | 49.21 |
| VIT_08s0056g00290.t01 | Wine grape | cytosol, mitochondrion | 49.21 | 48.96 |
| Bra020916.1-P | Field mustard | cytosol, plastid | 47.12 | 48.91 |
| CDX76451 | Canola | cytosol, plastid | 47.12 | 48.91 |
| Solyc10g074740.1.1 | Tomato | cytosol, plastid | 50.79 | 48.74 |
| PGSC0003DMT400071219 | Potato | cytosol, plastid | 50.79 | 48.74 |
| CDX82773 | Canola | cytosol | 48.69 | 48.69 |
| CDX96968 | Canola | cytosol | 47.12 | 46.63 |
| TraesCS7A01G050500.1 | Wheat | cytosol | 35.08 | 41.1 |
| TraesCS4A01G436700.1 | Wheat | cytosol | 34.03 | 37.36 |
| CDX98672 | Canola | cytosol | 48.69 | 36.61 |
| Bra038801.1-P | Field mustard | cytosol | 48.69 | 35.63 |
| TraesCS2A01G349100.1 | Wheat | plastid | 37.17 | 33.02 |
| TraesCS3A01G488400.1 | Wheat | cytosol, plastid | 32.98 | 32.98 |
| TraesCS1A01G134000.1 | Wheat | cytosol | 29.32 | 32.56 |
| TraesCS1A01G238800.1 | Wheat | mitochondrion | 29.32 | 29.63 |
| TraesCS3A01G038300.1 | Wheat | cytosol | 26.18 | 26.88 |
| TraesCS5A01G238900.1 | Wheat | mitochondrion | 24.61 | 25.68 |
| TraesCS3A01G488700.1 | Wheat | nucleus, plastid | 25.13 | 25.0 |
| TraesCS7A01G133200.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 31.41 | 17.75 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G103600.1 | EnsemblPlantsGene:TraesCS2A01G103600 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR45003 | PFAM:PF13405 |
| PFAM:PF13499 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 | SUPFAM:SSF47473 |
| TIGR:cd00051 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr2A:-:57175717..57176292
Molecular Weight (calculated)
20348.8 Da
IEP (calculated)
4.238
GRAVY (calculated)
-0.301
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGEHQQSQG AAKALSKGSP SPSFRLRNGS LNAVRLRRVF DMFDRNGDGE ITVDELAQAL DALGLEADRA SLAATVGAHV PPGASGLRFE DFEGLHRALG
101: DALFGALADD AEEGGAGGQD EEEMREAFKV FDVDGDGFIS ASELQEVLKK LGMPEASSLA NVREMICNVD RDSDGRVDFG EFKIMMQGIN V
101: DALFGALADD AEEGGAGGQD EEEMREAFKV FDVDGDGFIS ASELQEVLKK LGMPEASSLA NVREMICNVD RDSDGRVDFG EFKIMMQGIN V
001: MEINNEKKKL SRQSSSFRLR SPSLNALRLH RVFDLFDKNN DGFITVEELS QALSRLGLDA DFSDLKSTVD SFIKPDKTGL RFDDFAALHK TLDESFFGGE
101: GSCCDGSPES DLEEAFNVFD EDGDGFISAV ELQKVLKKLG LPEAGEIEQV EKMIVSVDSN HDGRVDFFEF KNMMQTVVVP S
101: GSCCDGSPES DLEEAFNVFD EDGDGFISAV ELQKVLKKLG LPEAGEIEQV EKMIVSVDSN HDGRVDFFEF KNMMQTVVVP S
Arabidopsis Description
CML43Probable calcium-binding protein CML43 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI19]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.