Factsheet for GSMUA_Achr8P01570_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P03980_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20780.1	GSMUA_Achr1P03980_001	AT2G46600.1	19720824

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G174400.1	Wheat	plastid	68.11	66.67
TraesCS4B01G172400.1	Wheat	plastid	68.11	66.67
Os03t0331700-02	Rice	plasma membrane	68.11	66.32
TraesCS4A01G132300.1	Wheat	plastid	68.11	65.97
Zm00001d029028_P001	Maize	plastid	67.03	65.96
HORVU4Hr1G050990.1	Barley	plastid	68.11	65.28
KXG39446	Sorghum	plastid	67.03	64.92
EER92319	Sorghum	cytosol	65.95	64.89
Os08t0144100-01	Rice	plasma membrane	67.57	63.78
Zm00001d047535_P001	Maize	plastid	63.78	63.1
Os07t0681400-01	Rice	cytosol	66.49	62.44
TraesCS7A01G306000.1	Wheat	plastid	65.41	61.73
TraesCS7D01G302700.1	Wheat	plastid	65.41	61.73
HORVU7Hr1G072770.1	Barley	plastid	65.95	61.62
Zm00001d022430_P001	Maize	cytosol, plastid	66.49	61.5
TraesCS2A01G103600.1	Wheat	plastid	63.24	61.26
TraesCS7B01G206200.1	Wheat	plastid	65.41	61.11
TraesCS2D01G103400.1	Wheat	plastid	62.7	60.73
TraesCS2B01G120900.1	Wheat	plastid	62.7	60.73
EER97743	Sorghum	plastid	64.86	60.3
Zm00001d007181_P001	Maize	plastid	65.95	60.1
AT5G44460.1	Thale cress	cytosol	56.22	57.46
Bra033745.1-P	Field mustard	cytosol	55.68	56.59
CDY14927	Canola	cytosol	55.14	56.04
Bra039511.1-P	Field mustard	cytosol	55.14	56.04
CDX94789	Canola	cytosol	55.14	56.04
CDY49013	Canola	cytosol	55.14	56.04
AT4G20780.1	Thale cress	cytosol	56.76	54.97
CDY31433	Canola	cytosol, plastid	54.05	54.35
Bra020916.1-P	Field mustard	cytosol, plastid	53.51	53.8
CDX76451	Canola	cytosol, plastid	53.51	53.8
CDX94006	Canola	cytosol	54.05	53.76
TraesCS5D01G348900.1	Wheat	cytosol	47.03	53.37
Bra013470.1-P	Field mustard	cytosol	54.05	53.19
CDX79002	Canola	cytosol	54.05	53.19
TraesCS5A01G343000.1	Wheat	cytosol, mitochondrion	46.49	52.44
CDX82773	Canola	cytosol	54.05	52.36
CDX96968	Canola	cytosol	54.59	52.33
VIT_08s0056g00290.t01	Wine grape	cytosol, mitochondrion	54.05	52.08
Solyc10g074740.1.1	Tomato	cytosol, plastid	55.68	51.76
KRH40630	Soybean	mitochondrion	50.81	51.37
TraesCS5B01G342800.1	Wheat	cytosol	44.86	51.23
PGSC0003DMT400071219	Potato	cytosol, plastid	54.59	50.75
HORVU5Hr1G085800.2	Barley	cytosol	45.41	48.0
Os05t0312600-01	Rice	cytosol, plastid	49.19	46.19
GSMUA_Achr8P28890_001	Banana	cytosol	35.68	44.0
GSMUA_Achr3P16870_001	Banana	cytosol	35.14	43.05
GSMUA_Achr1P13420_001	Banana	cytosol	34.59	42.67
GSMUA_Achr2P05840_001	Banana	cytosol	34.59	42.67
GSMUA_Achr6P28770_001	Banana	cytosol	33.51	41.33
CDX98672	Canola	cytosol	54.05	39.37
Bra038801.1-P	Field mustard	cytosol	54.05	38.31
GSMUA_Achr9P07990_001	Banana	endoplasmic reticulum, golgi, plastid	38.92	32.58
GSMUA_Achr8P17950_001	Banana	cytosol, plastid	30.81	32.2
GSMUA_Achr11P...	Banana	cytosol, plastid	28.11	30.23
GSMUA_Achr8P09680_001	Banana	plastid	30.27	27.72
GSMUA_Achr6P35120_001	Banana	endoplasmic reticulum	32.43	27.65
GSMUA_Achr9P27060_001	Banana	plastid	25.41	23.86
GSMUA_Achr6P09820_001	Banana	cytosol	31.89	22.61
GSMUA_Achr8P00110_001	Banana	endoplasmic reticulum, golgi	29.19	18.75

Protein Annotations

EnsemblPlants:GSMUA_Achr8P01570_001	EnsemblPlants:GSMUA_Achr8T01570_001	EnsemblPlantsGene:GSMUA_Achr8G01570_001	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR45003
PFAM:PF13405	PFAM:PF13499	PFscan:PS50222	ScanProsite:PS00018	SEG:seg	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI0002961CFF	UniProt:M0TLQ9	MapMan:35.1	:	:

Description

Probable calcium-binding protein CML27 [Source:GMGC_GENE;Acc:GSMUA_Achr8G01570_001]

Coordinates

chr8:+:1250714..1251461

Molecular Weight (calculated)

20203.7 Da

IEP (calculated)

4.270

GRAVY (calculated)

-0.301

Length

185 amino acids

Sequence
(BLAST)

001: MEEGAKPTQT LGRPSTSFRL RSESLNALRL RRVFDLFDHN GDGEITVEEL ALALDRLGLG ASPDELRPTV AAYIQPGRAG LAFEEFEALH RDLGDSLFGA
101: SDAIGETHGE GEEDMREAFR VFDEDGDGFI SASELQAVLV KLGLAEGRSI VRVQEMICSV DQDSDGRVDF GEFKHMMQGI TVRGA

Best Arabidopsis Sequence Match ( AT4G20780.1 )
(BLAST)

001: MESNNNEKKK VARQSSSFRL RSPSLNALRL QRIFDLFDKN GDGFITVEEL SQALTRLGLN ADLSDLKSTV ESYIQPGNTG LNFDDFSSLH KTLDDSFFGG
101: ACGGGENEDD PSSAAENESD LAEAFKVFDE NGDGFISARE LQTVLKKLGL PEGGEMERVE KMIVSVDRNQ DGRVDFFEFK NMMRTVVIPS S

Arabidopsis Description

CML42Calcium-binding protein CML42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.