Factsheet for GSMUA_Achr8P17950_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
extracellular 1
cytosol 2
vacuole 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, plastid	63.84	65.7
TraesCS1A01G134000.1	Wheat	cytosol	56.5	58.14
TraesCS1D01G125800.1	Wheat	cytosol	55.93	57.56
TraesCS1B01G148000.1	Wheat	cytosol	55.93	57.56
EES19251	Sorghum	cytosol	54.24	53.63
Os05t0223000-01	Rice	plasma membrane	54.8	51.32
Solyc06g068960.1.1	Tomato	endoplasmic reticulum, unclear	43.5	50.0
PGSC0003DMT400014742	Potato	cytosol	45.76	49.39
PGSC0003DMT400074098	Potato	cytosol	42.94	49.35
Solyc03g118810.1.1	Tomato	cytosol	45.2	48.78
GSMUA_Achr3P16870_001	Banana	cytosol	37.85	44.37
KRH48613	Soybean	cytosol	44.63	44.13
KRH24162	Soybean	cytosol	34.46	43.57
GSMUA_Achr8P28890_001	Banana	cytosol	36.72	43.33
GSMUA_Achr6P28770_001	Banana	cytosol	36.16	42.67
HORVU1Hr1G029850.1	Barley	cytosol	54.8	42.54
KRH15405	Soybean	cytosol	34.46	42.36
CDX96488	Canola	cytosol	37.85	42.14
CDX72996	Canola	cytosol	37.85	42.14
Bra015979.1-P	Field mustard	cytosol	37.85	42.14
GSMUA_Achr1P13420_001	Banana	cytosol	35.59	42.0
GSMUA_Achr2P05840_001	Banana	cytosol	35.59	42.0
KRH41828	Soybean	cytosol	42.37	41.67
CDY70127	Canola	cytosol	38.98	41.32
Bra025924.1-P	Field mustard	cytosol	38.98	41.32
AT1G18210.1	Thale cress	cytosol	39.55	41.18
AT1G73630.1	Thale cress	cytosol	37.29	40.49
Bra016564.1-P	Field mustard	cytosol	39.55	40.23
KRH02767	Soybean	cytosol	34.46	40.13
CDY19196	Canola	cytosol	40.11	40.11
KRH16247	Soybean	cytosol	29.38	39.69
CDX83860	Canola	cytosol	38.98	38.98
CDX96729	Canola	cytosol	37.85	38.51
GSMUA_Achr6P09820_001	Banana	cytosol	56.5	38.31
KRH60530	Soybean	plastid	41.24	33.8
GSMUA_Achr8P09680_001	Banana	plastid	37.85	33.17
GSMUA_Achr9P07990_001	Banana	endoplasmic reticulum, golgi, plastid	39.55	31.67
GSMUA_Achr8P01570_001	Banana	cytosol	32.2	30.81
GSMUA_Achr6P35120_001	Banana	endoplasmic reticulum	37.29	30.41
GSMUA_Achr8P00110_001	Banana	endoplasmic reticulum, golgi	42.37	26.04
GSMUA_Achr9P27060_001	Banana	plastid	28.81	25.89

Protein Annotations

EnsemblPlants:GSMUA_Achr8P17950_001	EnsemblPlants:GSMUA_Achr8T17950_001	EnsemblPlantsGene:GSMUA_Achr8G17950_001	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10891
PANTHER:PTHR10891:SF698	PFAM:PF13499	PFscan:PS50222	ScanProsite:PS00018	SEG:seg	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI0002968CCC	UniProt:M0TRE8	MapMan:35.1	:	:

Description

Probable calcium-binding protein CML18 [Source:GMGC_GENE;Acc:GSMUA_Achr8G17950_001]

Coordinates

chr8:-:19877039..19877572

Molecular Weight (calculated)

18936.2 Da

IEP (calculated)

4.353

GRAVY (calculated)

-0.302

Length

177 amino acids

Sequence
(BLAST)

001: MAKSQISSSS STPSRSSSVG LHRMDELEKV FARFDADGDG RISASELAAV LRALGSDPSP DEIRDMIAEM DADRDGFVDL QEFAAFHRCG VGRGGAEAEL
101: KDAFRMYDLD SDGLISVDEL LRVMRSLGEK CTLEDCARMI RSVDSDGDGS VSFEEFKTMM TGGCCGLGSS GRKPAAA

Best Arabidopsis Sequence Match ( AT5G37770.1 )
(BLAST)

001: MSSKNGVVRS CLGSMDDIKK VFQRFDKNGD GKISVDELKE VIRALSPTAS PEETVTMMKQ FDLDGNGFID LDEFVALFQI GIGGGGNNRN DVSDLKEAFE
101: LYDLDGNGRI SAKELHSVMK NLGEKCSVQD CKKMISKVDI DGDGCVNFDE FKKMMSNGGG A

Arabidopsis Description

CML24TCH2 [Source:UniProtKB/TrEMBL;Acc:A0A178UBB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.