CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G134000.1	Wheat	cytosol	74.3	77.33
TraesCS1D01G125800.1	Wheat	cytosol	73.74	76.74
TraesCS1B01G148000.1	Wheat	cytosol	73.18	76.16
Os05t0223000-01	Rice	plasma membrane	77.65	73.55
HORVU1Hr1G029850.1	Barley	cytosol	73.74	57.89
GSMUA_Achr8P17950_001	Banana	cytosol, plastid	53.63	54.24
Solyc06g068960.1.1	Tomato	endoplasmic reticulum, unclear	43.02	50.0
PGSC0003DMT400074098	Potato	cytosol	42.46	49.35
Solyc03g118810.1.1	Tomato	cytosol	44.69	48.78
PGSC0003DMT400014742	Potato	cytosol	44.13	48.17
KRH48613	Soybean	cytosol	47.49	47.49
KRH24162	Soybean	cytosol	35.75	45.71
CDY70127	Canola	cytosol	42.46	45.51
Bra025924.1-P	Field mustard	cytosol	42.46	45.51
CDX96488	Canola	cytosol	40.22	45.28
CDX72996	Canola	cytosol	40.22	45.28
Bra015979.1-P	Field mustard	cytosol	40.22	45.28
AT1G18210.1	Thale cress	cytosol	42.46	44.71
KRH16247	Soybean	cytosol	32.4	44.27
AT1G73630.1	Thale cress	cytosol	39.66	43.56
KRH41828	Soybean	cytosol	43.58	43.33
CDY19196	Canola	cytosol	42.46	42.94
KRH02767	Soybean	cytosol	36.31	42.76
Bra016564.1-P	Field mustard	cytosol	41.34	42.53
KRH15405	Soybean	cytosol	34.08	42.36
GSMUA_Achr11P...	Banana	cytosol, plastid	40.22	41.86
CDX83860	Canola	cytosol	41.34	41.81
CDX96729	Canola	cytosol	40.22	41.38
EES04217	Sorghum	cytosol, mitochondrion, plastid	42.46	40.21
EES19444	Sorghum	plastid	42.46	38.19
OQU78964	Sorghum	cytosol	35.2	38.18
EES00360	Sorghum	cytosol	43.02	37.38
GSMUA_Achr6P09820_001	Banana	cytosol	53.07	36.4
KRH60530	Soybean	plastid	43.02	35.65
EER96860	Sorghum	cytosol, mitochondrion	31.84	30.98
EER92319	Sorghum	cytosol	30.17	28.72
EER97743	Sorghum	plastid	30.73	27.64
KXG39446	Sorghum	plastid	29.05	27.23
KXG27695	Sorghum	plastid	29.61	26.9
EES02048	Sorghum	plastid	28.49	26.7
EER87935	Sorghum	endoplasmic reticulum, vacuole	35.75	26.12
EES11048	Sorghum	plastid	34.64	26.05
EES16521	Sorghum	plastid	30.73	25.7

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	EntrezGene:8066629	UniProt:C5YV44	EnsemblPlants:EES19251	ProteinID:EES19251
ProteinID:EES19251.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:IPR002048	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR10891
PANTHER:PTHR10891:SF698	SMART:SM00054	EnsemblPlantsGene:SORBI_3009G083600	SUPFAM:SSF47473	unigene:Sbi.20026	UniParc:UPI0001A887C5
RefSeq:XP_002440821.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:12791417..12792296

Molecular Weight (calculated)

19255.4 Da

IEP (calculated)

4.507

GRAVY (calculated)

-0.636

Length

179 amino acids

Sequence
(BLAST)

001: MASVKGGDSA KAKAAGRGGR GMPVAEVEQV FRRYDANGDG KISAEELASV LRALGAPPGP GEVRRMMDEM DSDRDGFVDL AEFIAFHCSN GEEEEGAEEG
101: EGREDATEAD LREAFRMYDA DRNGLISARE LHRVLRQLGD KCSVADCSRM IRSVDADGDG SVNFDEFKKM MGAGAGGRR

Best Arabidopsis Sequence Match ( AT5G37770.1 )
(BLAST)

001: MSSKNGVVRS CLGSMDDIKK VFQRFDKNGD GKISVDELKE VIRALSPTAS PEETVTMMKQ FDLDGNGFID LDEFVALFQI GIGGGGNNRN DVSDLKEAFE
101: LYDLDGNGRI SAKELHSVMK NLGEKCSVQD CKKMISKVDI DGDGCVNFDE FKKMMSNGGG A

Arabidopsis Description

CML24TCH2 [Source:UniProtKB/TrEMBL;Acc:A0A178UBB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.