CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01073
EES02247
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41410.1	EES01073	AT2G42580.1	19000166
AT2G41410.1	EES02247	AT2G42580.1	19000166
AT2G41410.1	OQU78515	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27695	Sorghum	plastid	55.61	60.41
Bra016936.1-P	Field mustard	cytosol	23.36	47.62
EES02048	Sorghum	plastid	38.32	42.93
AT3G10190.1	Thale cress	cytosol, mitochondrion	37.85	38.76
CDY06925	Canola	cytosol, mitochondrion, plastid	38.78	38.25
CDX79938	Canola	cytosol, mitochondrion, plastid	37.85	38.03
CDY23852	Canola	cytosol, mitochondrion, plastid	37.85	38.03
Bra004620.1-P	Field mustard	cytosol, mitochondrion, plastid	37.85	38.03
Bra029821.1-P	Field mustard	plastid	36.45	37.5
CDY14768	Canola	cytosol, mitochondrion, plastid	37.85	37.33
Solyc10g079420.1.1	Tomato	nucleus, plastid	35.51	37.07
CDY60169	Canola	cytosol, plastid	35.98	37.02
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	35.05	36.59
AT2G41410.1	Thale cress	cytosol, mitochondrion, plastid	36.45	36.11
KRH66816	Soybean	plastid	36.92	36.07
VIT_08s0007g05790.t01	Wine grape	mitochondrion, plastid	37.38	36.04
KRG95139	Soybean	plastid	36.45	35.78
PGSC0003DMT400076709	Potato	mitochondrion	34.58	35.07
CDY00910	Canola	cytosol, plastid	35.51	34.86
OQU78964	Sorghum	cytosol	23.83	30.91
EES19251	Sorghum	cytosol	25.7	30.73
GSMUA_Achr8P00110_001	Banana	endoplasmic reticulum, golgi	41.12	30.56
PGSC0003DMT400027581	Potato	cytosol, plastid	29.91	29.63
EES04217	Sorghum	cytosol, mitochondrion, plastid	25.7	29.1
Solyc04g018110.1.1	Tomato	plastid	32.71	28.93
EER96860	Sorghum	cytosol, mitochondrion	24.3	28.26
EES19444	Sorghum	plastid	24.3	26.13
EES00360	Sorghum	cytosol	24.77	25.73
KXG39446	Sorghum	plastid	22.9	25.65
EER87935	Sorghum	endoplasmic reticulum, vacuole	28.5	24.9
EER92319	Sorghum	cytosol	21.5	24.47
EES11048	Sorghum	plastid	26.64	23.95
EER97743	Sorghum	plastid	21.96	23.62

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.2	EntrezGene:8071411	UniProt:C5YQJ2	ncoils:Coil	EnsemblPlants:EES16521
ProteinID:EES16521	ProteinID:EES16521.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR10891	PANTHER:PTHR10891:SF739	SMART:SM00054	EnsemblPlantsGene:SORBI_3008G012900	SUPFAM:SSF47473	UniParc:UPI0001A883C8
RefSeq:XP_002442683.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:1097898..1098870

Molecular Weight (calculated)

22172.6 Da

IEP (calculated)

4.470

GRAVY (calculated)

-0.352

Length

214 amino acids

Sequence
(BLAST)

001: MKLTVSFCGG GSSSSTAAAS PKASNKSKST RRSSKDGNKS GGGGSSFSST ASASSSHECK SAVTTPRTVL LPVPSSSPPR APRTAGTTSS SRKPPAAVTR
101: EELEVALRRV VSSEEELAEM LAEVDAGLVV PEELVGGDDD AADDDEGNLR EVFAVFDADG DGRISAEELR AVIASLGDDR CSVEDCRRMI GGVDVDGDGF
201: VCFDEFSRMM MHGL

Best Arabidopsis Sequence Match ( AT2G41410.1 )
(BLAST)

001: MKLAASLNRL SPKRLFRTKS KASVSRSEPS SFSSNASSSS SDGSYGNLKQ GPTATPISVL PQNSGDFYTE LVQAFKLIDR DDDGVVSRGD LAALISRLSH
101: EPPSQEEVSL MLREVDGGDG GCISLEDLAS RVAGTSGEGS VETEELREVF EIFDVDRNGK ISAEELHRVF GVIGDERCTL EECMRMIATV DGNGDGFVCF
201: DDFCRMMVPA MNDHHH

Arabidopsis Description

CML35Probable calcium-binding protein CML35 [Source:UniProtKB/Swiss-Prot;Acc:P30188]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.