Factsheet for Bra016936.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra004709.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41410.1	Bra000267.1-P	AT2G42580.1	19000166
AT2G41410.1	Bra004709.1-P	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14768	Canola	cytosol, mitochondrion, plastid	99.05	47.93
TraesCS5B01G134200.1	Wheat	cytosol	40.95	47.78
CDY06925	Canola	cytosol, mitochondrion, plastid	97.14	47.0
Bra004620.1-P	Field mustard	cytosol, mitochondrion, plastid	80.95	39.91
AT2G41410.1	Thale cress	cytosol, mitochondrion, plastid	79.05	38.43
Bra035972.1-P	Field mustard	cytosol	37.14	35.14
Bra029821.1-P	Field mustard	plastid	59.05	29.81
Bra032785.1-P	Field mustard	cytosol	35.24	28.91
Solyc10g079420.1.1	Tomato	nucleus, plastid	56.19	28.78
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	56.19	28.78
KRG95139	Soybean	plastid	59.05	28.44
KRH66816	Soybean	plastid	59.05	28.31
PGSC0003DMT400076709	Potato	mitochondrion	54.29	27.01
PGSC0003DMT400027581	Potato	cytosol, plastid	55.24	26.85
VIT_08s0007g05790.t01	Wine grape	mitochondrion, plastid	56.19	26.58
GSMUA_Achr8P09680_001	Banana	plastid	50.48	26.24
Bra040379.1-P	Field mustard	cytosol	36.19	25.5
Os11t0141400-01	Rice	cytosol	44.76	25.0
Bra004165.1-P	Field mustard	cytosol	36.19	24.84
Solyc04g018110.1.1	Tomato	plastid	56.19	24.38
Bra025439.1-P	Field mustard	cytosol	37.14	24.38
Bra032677.1-P	Field mustard	cytosol	35.24	24.34
Bra034907.1-P	Field mustard	cytosol	35.24	24.34
Bra001254.1-P	Field mustard	cytosol	35.24	24.18
TraesCS5D01G141900.1	Wheat	plastid	41.9	24.04
HORVU5Hr1G043460.1	Barley	plastid	41.9	24.04
Zm00001d004972_P001	Maize	plastid	41.9	23.53
Bra000836.1-P	Field mustard	cytosol	34.29	23.38
EES16521	Sorghum	plastid	47.62	23.36
KXG27695	Sorghum	plastid	43.81	23.35
Bra015979.1-P	Field mustard	cytosol	35.24	23.27
Bra037722.1-P	Field mustard	cytosol	37.14	23.08
Bra034870.1-P	Field mustard	cytosol	37.14	23.08
Bra019554.1-P	Field mustard	cytosol	37.14	23.08
Bra016564.1-P	Field mustard	cytosol	37.14	22.41
Bra025924.1-P	Field mustard	cytosol	35.24	22.16
Bra012497.1-P	Field mustard	cytosol	36.19	20.65
Os12t0138050-00	Rice	plastid	45.71	20.17
Bra039845.1-P	Field mustard	plastid	35.24	19.58
Bra010974.1-P	Field mustard	cytosol	34.29	19.25
EES02048	Sorghum	plastid	34.29	18.85
Zm00001d042108_P001	Maize	cytosol, plastid	34.29	18.75
TraesCS3A01G488700.1	Wheat	nucleus, plastid	34.29	18.75
Bra003376.1-P	Field mustard	vacuole	36.19	18.72
Bra007450.1-P	Field mustard	endoplasmic reticulum, vacuole	35.24	18.69
TraesCS3D01G484600.1	Wheat	cytosol, plastid	34.29	18.46
GSMUA_Achr8P00110_001	Banana	endoplasmic reticulum, golgi	50.48	18.4
TraesCS3B01G536600.1	Wheat	nucleus, plastid	34.29	18.27
Os01t0949300-01	Rice	plasma membrane	34.29	17.65
Bra020916.1-P	Field mustard	cytosol, plastid	29.52	16.85
Bra013470.1-P	Field mustard	cytosol	28.57	15.96
Bra033745.1-P	Field mustard	cytosol	27.62	15.93
Bra039511.1-P	Field mustard	cytosol	25.71	14.84
HORVU3Hr1G106950.3	Barley	cytosol	34.29	13.33
Bra038801.1-P	Field mustard	cytosol	30.48	12.26

Protein Annotations

EnsemblPlants:Bra016936.1	EnsemblPlants:Bra016936.1-P	EnsemblPlantsGene:Bra016936	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10891
PANTHER:PTHR10891:SF739	PFAM:PF13499	PFscan:PS50222	ScanProsite:PS00018	SMART:SM00054	SUPFAM:SSF47473
UniParc:UPI00025452FF	UniProt:M4DKA7	MapMan:35.1	:	:	:

Description

AT2G41410 (E=3e-042) | calmodulin, putative

Coordinates

chrA04:-:17528725..17529042

Molecular Weight (calculated)

11429.1 Da

IEP (calculated)

3.729

GRAVY (calculated)

-0.243

Length

105 amino acids

Sequence
(BLAST)

001: MLQEVDGGGD GCISLEELAS RVAGTSSDSD EGSVEMREVF EFFDLDHDGR ISAEELHRVF GVIGDERCTL EECVRMIATV DGNGDGFVCF DDFCRMMEAS
101: GSSDE

Best Arabidopsis Sequence Match ( AT2G41410.1 )
(BLAST)

001: MKLAASLNRL SPKRLFRTKS KASVSRSEPS SFSSNASSSS SDGSYGNLKQ GPTATPISVL PQNSGDFYTE LVQAFKLIDR DDDGVVSRGD LAALISRLSH
101: EPPSQEEVSL MLREVDGGDG GCISLEDLAS RVAGTSGEGS VETEELREVF EIFDVDRNGK ISAEELHRVF GVIGDERCTL EECMRMIATV DGNGDGFVCF
201: DDFCRMMVPA MNDHHH

Arabidopsis Description

CML35Probable calcium-binding protein CML35 [Source:UniProtKB/Swiss-Prot;Acc:P30188]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.