Factsheet for Zm00001d004972_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004494_P001
Zm00001d006366_P001
Zm00001d008930_P003
Zm00001d009724_P009
Zm00001d011352_P001
Zm00001d033961_P001
Zm00001d039362_P002
Zm00001d044479_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41410.1	Zm00001d004494_P001	AT2G42580.1	19000166
AT2G41410.1	Zm00001d006366_P001	AT2G42580.1	19000166
AT2G41410.1	Zm00001d008930_P003	AT2G42580.1	19000166
AT2G41410.1	Zm00001d009724_P009	AT2G42580.1	19000166
AT2G41410.1	Zm00001d011352_P001	AT2G42580.1	19000166
AT2G41410.1	Zm00001d033961_P001	AT2G42580.1	19000166
AT2G41410.1	Zm00001d039362_P002	AT2G42580.1	19000166
AT2G41410.1	Zm00001d044479_P001	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27695	Sorghum	plastid	81.28	77.16
TraesCS5B01G134200.1	Wheat	cytosol	36.36	75.56
TraesCS5D01G141900.1	Wheat	plastid	61.5	62.84
HORVU5Hr1G043460.1	Barley	plastid	59.36	60.66
Os11t0141400-01	Rice	cytosol	57.75	57.45
Os12t0138050-00	Rice	plastid	58.29	45.8
Zm00001d042108_P001	Maize	cytosol, plastid	44.38	43.23
Bra016936.1-P	Field mustard	cytosol	23.53	41.9
KRH66816	Soybean	plastid	40.11	34.25
KRG95139	Soybean	plastid	39.57	33.95
Bra004620.1-P	Field mustard	cytosol, mitochondrion, plastid	37.43	32.86
CDX79938	Canola	cytosol, mitochondrion, plastid	37.43	32.86
VIT_08s0007g05790.t01	Wine grape	mitochondrion, plastid	38.5	32.43
CDY23852	Canola	cytosol, mitochondrion, plastid	36.9	32.39
PGSC0003DMT400076709	Potato	mitochondrion	36.36	32.23
AT3G10190.1	Thale cress	cytosol, mitochondrion	35.83	32.06
AT2G41410.1	Thale cress	cytosol, mitochondrion, plastid	36.9	31.94
Solyc10g079420.1.1	Tomato	nucleus, plastid	34.76	31.71
CDY14768	Canola	cytosol, mitochondrion, plastid	36.36	31.34
CDY06925	Canola	cytosol, mitochondrion, plastid	36.36	31.34
CDY60169	Canola	cytosol, plastid	34.76	31.25
Bra029821.1-P	Field mustard	plastid	34.76	31.25
PGSC0003DMT400021079	Potato	cytosol, mitochondrion, plastid	34.22	31.22
CDY00910	Canola	cytosol, plastid	35.29	30.28
GSMUA_Achr8P00110_001	Banana	endoplasmic reticulum, golgi	45.45	29.51
PGSC0003DMT400027581	Potato	cytosol, plastid	33.16	28.7
Solyc04g018110.1.1	Tomato	plastid	36.9	28.51
Zm00001d023992_P001	Maize	cytosol	24.06	28.3
Zm00001d020722_P001	Maize	cytosol, mitochondrion	27.27	27.72
Zm00001d042107_P001	Maize	mitochondrion	27.81	26.8
Zm00001d009985_P001	Maize	cytosol, mitochondrion, plastid	26.2	25.93
Zm00001d008573_P001	Maize	plastid	28.34	25.85
Zm00001d003197_P001	Maize	plastid	29.41	24.77
Zm00001d022430_P001	Maize	cytosol, plastid	26.2	24.5
Zm00001d007181_P001	Maize	plastid	26.2	24.14
Zm00001d047535_P001	Maize	plastid	24.06	24.06
Zm00001d038061_P001	Maize	mitochondrion	26.2	24.02
Zm00001d029028_P001	Maize	plastid	23.53	23.4
Zm00001d037477_P001	Maize	endoplasmic reticulum, vacuole	28.88	22.22
Zm00001d039944_P001	Maize	cytosol, plastid	22.99	22.05

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.2	UniProt:B4FRR5	EMBL:BT039803	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	EMBL:EU963862	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048
ProteinID:ONM19866.1	PFAM:PF13202	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR10891	PANTHER:PTHR10891:SF739
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI00017B77BA	EnsemblPlantsGene:Zm00001d004972	EnsemblPlants:Zm00001d004972_P001	EnsemblPlants:Zm00001d004972_T001
SEG:seg	:	:	:	:	:

Description

Probable calcium-binding protein CML36

Coordinates

chr2:-:151267002..151267565

Molecular Weight (calculated)

19313.4 Da

IEP (calculated)

4.365

GRAVY (calculated)

-0.195

Length

187 amino acids

Sequence
(BLAST)

001: MKLSMPFFGS SSSSSGKKRK GSKTGGSSSF VSTASSSSSD ECASPSAVTT TPRTVLQSQP SAPNPKPPAV VAAAVTREDL EVALRRVVRS EDELAAVLAE
101: AEAAGLAPEQ AASAEAEDEA ELRDAFAVFD ADGDGRISAE ELRAVLAALG DAACSVEDCR RMIGRVDGDG DGFVCFHDFS RMMMQGA

Best Arabidopsis Sequence Match ( AT3G10190.1 )
(BLAST)

001: MKLAKLIPKR FFIRSKDRST VSKSPTAFSF GSASSSSGQD CKNSGGDGGG GSVTPTSILP EVPSPYSYVE ILQAFKLIDR DNDGAVSRHD LESLLSRLGP
101: DPLTEEEINV MLKEVDCDGD GTIRLEELAS RVVSLDPARD STELKETFEF FDADRDGLIS ADELLRVFST IGDERCTLDD CKRMIADVDE DGDGFVCFTE
201: FSRMMDLQR

Arabidopsis Description

CML36Probable calcium-binding protein CML36 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS31]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.