Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033961_P001 | Maize | cytosol | 100.0 | 100.0 |
| Zm00001d002746_P001 | Maize | cytosol | 100.0 | 100.0 |
| Zm00001d017669_P001 | Maize | cytosol | 100.0 | 100.0 |
| Zm00001d052005_P001 | Maize | cytosol | 100.0 | 100.0 |
| Zm00001d039774_P001 | Maize | cytosol | 99.57 | 99.57 |
| Zm00001d035261_P001 | Maize | cytosol | 99.57 | 99.57 |
| Zm00001d035258_P001 | Maize | cytosol | 99.14 | 99.14 |
| Zm00001d009724_P009 | Maize | cytosol | 99.14 | 21.61 |
| CDY34222 | Canola | cytosol | 0.86 | 0.65 |
| GSMUA_Achr7P24480_001 | Banana | cytosol | 1.72 | 0.62 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 1.29 | 0.6 |
| GSMUA_Achr4P08560_001 | Banana | cytosol | 1.72 | 0.58 |
| VIT_12s0028g02240.t01 | Wine grape | cytosol | 1.72 | 0.56 |
| CDX98517 | Canola | cytosol | 1.72 | 0.55 |
| CDX97619 | Canola | cytosol | 1.72 | 0.55 |
| CDY20095 | Canola | nucleus | 1.72 | 0.55 |
| CDY32327 | Canola | cytosol | 1.72 | 0.55 |
| AT3G14950.1 | Thale cress | cytosol | 1.72 | 0.55 |
| Bra027292.1-P | Field mustard | cytosol | 1.72 | 0.54 |
| Bra021583.1-P | Field mustard | nucleus | 1.72 | 0.53 |
| Bra023793.1-P | Field mustard | cytosol | 0.86 | 0.49 |
| Solyc10g007420.2.1 | Tomato | cytosol | 0.86 | 0.47 |
| Bra038116.1-P | Field mustard | cytosol | 1.29 | 0.46 |
| CDY25865 | Canola | cytosol | 1.29 | 0.46 |
| CDY45930 | Canola | cytosol | 1.29 | 0.46 |
| CDY25722 | Canola | cytosol, plastid | 1.29 | 0.45 |
| Bra030946.1-P | Field mustard | cytosol, plastid | 1.29 | 0.45 |
| CDY02514 | Canola | cytosol, plastid | 1.29 | 0.45 |
| Zm00001d008930_P003 | Maize | cytosol | 1.29 | 0.44 |
| KRH26223 | Soybean | nucleus | 1.29 | 0.44 |
| KRH55099 | Soybean | nucleus | 1.29 | 0.44 |
| Zm00001d044479_P001 | Maize | cytosol | 1.29 | 0.44 |
| Zm00001d011352_P001 | Maize | cytosol | 1.29 | 0.44 |
| KRH21985 | Soybean | cytosol | 1.29 | 0.43 |
| VIT_19s0014g01470.t01 | Wine grape | cytosol | 1.29 | 0.43 |
| KRH27330 | Soybean | cytosol | 1.29 | 0.43 |
| AT1G53300.1 | Thale cress | cytosol | 1.29 | 0.43 |
| PGSC0003DMT400032362 | Potato | cytosol | 1.29 | 0.43 |
| Solyc07g062580.2.1 | Tomato | cytosol | 1.29 | 0.43 |
| GSMUA_Achr3P25160_001 | Banana | cytosol | 1.29 | 0.42 |
| Solyc10g007250.1.1 | Tomato | cytosol | 0.43 | 0.36 |
| KRH22291 | Soybean | plastid | 0.86 | 0.34 |
| Solyc10g007240.1.1 | Tomato | cytosol | 0.86 | 0.34 |
| CDY34223 | Canola | cytosol | 0.43 | 0.31 |
| Bra023794.1-P | Field mustard | cytosol, nucleus, plastid | 0.43 | 0.31 |
| CDY49237 | Canola | cytosol | 0.86 | 0.3 |
| Zm00001d039362_P002 | Maize | cytosol | 0.86 | 0.3 |
| Bra007405.1-P | Field mustard | cytosol | 0.86 | 0.3 |
| CDX71941 | Canola | cytosol | 0.86 | 0.3 |
| KRH27037 | Soybean | nucleus | 0.86 | 0.3 |
| AT3G58620.1 | Thale cress | cytosol | 0.86 | 0.29 |
| PGSC0003DMT400054909 | Potato | cytosol | 0.43 | 0.24 |
| Solyc10g007220.1.1 | Tomato | cytosol | 0.43 | 0.2 |
| PGSC0003DMT400054911 | Potato | cytosol | 0.43 | 0.19 |
| Solyc10g007230.1.1 | Tomato | cytosol | 0.43 | 0.17 |
| PGSC0003DMT400054904 | Potato | cytosol | 0.43 | 0.17 |
| Bra004709.1-P | Field mustard | cytosol | 0.43 | 0.15 |
| CDY51514 | Canola | cytosol | 0.43 | 0.15 |
| CDY55390 | Canola | cytosol | 0.43 | 0.15 |
| CDY42827 | Canola | cytosol | 0.43 | 0.15 |
| CDY61202 | Canola | cytosol | 0.43 | 0.15 |
| Bra000267.1-P | Field mustard | cytosol | 0.43 | 0.15 |
| AT2G42580.1 | Thale cress | cytosol | 0.43 | 0.14 |
| Zm00001d004494_P001 | Maize | cytosol, mitochondrion | 0.0 | 0.0 |
| VIT_18s0001g09830.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| Solyc10g007430.1.1 | Tomato | cytosol, plastid | 0.0 | 0.0 |
| Zm00001d012121_P002 | Maize | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400091014 | Potato | nucleus | 0.0 | 0.0 |
| Zm00001d018088_P001 | Maize | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400054902 | Potato | cytosol | 0.0 | 0.0 |
| Zm00001d034423_P001 | Maize | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400054803 | Potato | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400054796 | Potato | cytosol, plastid | 0.0 | 0.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 0.0 | 0.0 |
| CDY40820 | Canola | mitochondrion | 0.0 | 0.0 |
| CDY34224 | Canola | cytosol | 0.0 | 0.0 |
| Bra023795.1-P | Field mustard | cytosol | 0.0 | 0.0 |
| Zm00001d052221_P002 | Maize | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| MapMan:17.7.5.2 | Gene3D:3.30.160.20 | Gene3D:3.30.70.1660 | UniProt:A0A1D6E418 | ProteinID:AQK55734.1 | ProteinID:AQK73710.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003747 | GO:GO:0005488 | GO:GO:0006412 |
| GO:GO:0006415 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0019538 | ProteinID:ONM09046.1 | ProteinID:ONM15265.1 | ProteinID:ONM23612.1 | InterPro:PCRF |
| PFAM:PF00472 | PFAM:PF03462 | ScanProsite:PS00745 | PANTHER:PTHR43116 | PANTHER:PTHR43116:SF1 | InterPro:Pep_chain_release_fac_I_II |
| SMART:SM00937 | SUPFAM:SSF75620 | UniParc:UPI0004DE7C1A | EnsemblPlantsGene:Zm00001d006366 | EnsemblPlants:Zm00001d006366_P001 | EnsemblPlants:Zm00001d006366_T001 |
Description
Peptide chain release factor PrfB1 chloroplastic
Coordinates
chr2:-:205740243..205741773
Molecular Weight (calculated)
26167.7 Da
IEP (calculated)
9.736
GRAVY (calculated)
-0.397
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MQDWADMLLR MYVRWGEKQR YKTRVVEKSP GEQAGIKSAT VELEGRYAYG YLSGEKGTHR IVRQSPFNAK GLRQTSFAGV EVMPLLPEES MAVDIPEEDL
101: EISFTRAGGK GGQNVNKVET AVRMVHIPTG IAVRCSEERS QLANKIKALS RLKAKLLVIA LEQRASEIKQ IRGDIVKAEW GQQIRNYVFH PYKLVKDVRT
201: GCETSDITGV MDGELDPFIR AYLKYKLTAA ATS
101: EISFTRAGGK GGQNVNKVET AVRMVHIPTG IAVRCSEERS QLANKIKALS RLKAKLLVIA LEQRASEIKQ IRGDIVKAEW GQQIRNYVFH PYKLVKDVRT
201: GCETSDITGV MDGELDPFIR AYLKYKLTAA ATS
001: MSMELTVLGP LAGRSFAIAG KPKLLLLRPT NLPLLRLSLP LSLPNFSSSS RFNSPIVFAA QESNLSVSNE NETSEWLMQD FYTLRKDVEI ASARVEEIRA
101: SANLQQLEQE ITNLESKATD TSFWDDRTKA QETLSSLNDL KDRMRLLSEF KTMVEDAETI VKLTEEMDST DVSLLEEAMG IIKELNKSLD KFELTQLLSG
201: PYDKEGAVVY ITAGAGGTDA QDWADMLLRM YMRWGEKQRY KTKVVEMSNG EEAGIKSATL EIEGRYAYGY ISGEKGTHRI VRQSPFNSKG LRQTSFSGVE
301: VMPLLPEEAV GIEIPEEDLD ISFTRAGGKG GQNVNKVETA VRITHIPTGV AVRCTEERSQ LANKTRALIR LKAKLMVIAE EQRATEIKEI RGDAVKAEWG
401: QQIRNYVFHP YKLVKDVRTG HETSDITSVM DGDLDPFIKA YLKHKYTLAM ASAVTN
101: SANLQQLEQE ITNLESKATD TSFWDDRTKA QETLSSLNDL KDRMRLLSEF KTMVEDAETI VKLTEEMDST DVSLLEEAMG IIKELNKSLD KFELTQLLSG
201: PYDKEGAVVY ITAGAGGTDA QDWADMLLRM YMRWGEKQRY KTKVVEMSNG EEAGIKSATL EIEGRYAYGY ISGEKGTHRI VRQSPFNSKG LRQTSFSGVE
301: VMPLLPEEAV GIEIPEEDLD ISFTRAGGKG GQNVNKVETA VRITHIPTGV AVRCTEERSQ LANKTRALIR LKAKLMVIAE EQRATEIKEI RGDAVKAEWG
401: QQIRNYVFHP YKLVKDVRTG HETSDITSVM DGDLDPFIKA YLKHKYTLAM ASAVTN
Arabidopsis Description
PRFB1Peptide chain release factor PrfB1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LVY0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.