Factsheet for Solyc07g062580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032362	Potato	cytosol	96.72	96.86
VIT_19s0014g01470.t01	Wine grape	cytosol	64.62	65.37
KRH26223	Soybean	nucleus	62.05	64.35
KRH21985	Soybean	cytosol	63.34	64.16
KRH55099	Soybean	nucleus	61.91	64.01
KRH27330	Soybean	cytosol	63.2	63.47
Bra038116.1-P	Field mustard	cytosol	57.06	60.79
CDY25865	Canola	cytosol	56.92	60.64
CDY45930	Canola	cytosol	56.21	59.79
CDY25722	Canola	cytosol, plastid	56.63	59.52
Bra030946.1-P	Field mustard	cytosol, plastid	56.49	59.1
CDY02514	Canola	cytosol, plastid	56.49	59.1
AT1G53300.1	Thale cress	cytosol	57.49	57.65
GSMUA_Achr7P24480_001	Banana	cytosol	51.78	55.93
GSMUA_Achr4P08560_001	Banana	cytosol	54.35	55.62
CDY34224	Canola	cytosol	5.42	55.07
GSMUA_Achr10P...	Banana	cytosol	52.21	54.87
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	39.09	54.47
Solyc10g007230.1.1	Tomato	cytosol	45.65	53.69
Os01t0218200-00	Rice	plastid	51.07	53.27
Solyc10g007240.1.1	Tomato	cytosol	45.08	53.2
EES01073	Sorghum	cytosol	51.5	53.01
TraesCS3B01G162100.1	Wheat	cytosol	50.78	52.98
Zm00001d008930_P003	Maize	cytosol	50.64	52.59
Os05t0210600-01	Rice	cytosol	29.96	52.37
HORVU1Hr1G093390.2	Barley	cytosol	50.21	52.3
TraesCS3D01G144600.1	Wheat	cytosol	50.36	52.3
Zm00001d039362_P002	Maize	cytosol	49.93	52.24
TraesCS3A01G143000.1	Wheat	cytosol	50.07	52.23
TraesCS3D01G231300.1	Wheat	cytosol, mitochondrion	51.21	52.18
TraesCS1B01G462300.1	Wheat	cytosol	51.64	52.16
Zm00001d044479_P001	Maize	cytosol	50.64	52.13
TraesCS1D01G437100.1	Wheat	nucleus	51.78	52.01
TraesCS3B01G251600.1	Wheat	cytosol, mitochondrion	50.93	51.89
TraesCS3A01G221800.1	Wheat	cytosol	50.78	51.74
TraesCS1A01G427400.1	Wheat	cytosol	51.36	51.65
HORVU3Hr1G054240.2	Barley	cytosol, mitochondrion	50.5	51.45
EES02247	Sorghum	plastid	50.07	51.32
Zm00001d011352_P001	Maize	cytosol	49.64	51.1
GSMUA_Achr3P25160_001	Banana	cytosol	51.5	50.7
Solyc10g007220.1.1	Tomato	cytosol	36.23	50.3
HORVU3Hr1G027650.2	Barley	mitochondrion	47.65	50.15
Bra023795.1-P	Field mustard	cytosol	6.28	50.0
OQU78515	Sorghum	cytosol	49.93	50.0
Solyc10g007420.2.1	Tomato	cytosol	29.96	49.41
GSMUA_AchrUn_...	Banana	cytosol	18.12	47.39
AT3G14950.1	Thale cress	cytosol	48.79	46.85
Zm00001d004494_P001	Maize	cytosol, mitochondrion	14.69	46.4
Os05t0587300-01	Rice	cytosol	36.38	45.95
Solyc10g007250.1.1	Tomato	cytosol	17.83	44.8
CDY20095	Canola	nucleus	46.51	44.78
CDY32327	Canola	cytosol	46.51	44.72
CDX98517	Canola	cytosol	45.36	43.92
Bra027292.1-P	Field mustard	cytosol	45.93	43.87
CDX97619	Canola	cytosol	45.36	43.86
Bra021583.1-P	Field mustard	nucleus	46.93	43.52
Solyc10g007430.1.1	Tomato	cytosol, plastid	23.4	43.39
CDY40820	Canola	mitochondrion	16.69	41.64
CDY34222	Canola	cytosol	17.69	40.26
Bra023793.1-P	Field mustard	cytosol	22.25	37.86
CDY34223	Canola	cytosol	17.4	37.42
Bra023794.1-P	Field mustard	cytosol, nucleus, plastid	17.12	36.81
Solyc04g055000.2.1	Tomato	cytosol	27.39	32.71
Zm00001d009724_P009	Maize	cytosol	48.64	31.9
Solyc04g073940.2.1	Tomato	cytosol	24.68	31.86
Solyc07g006180.2.1	Tomato	cytosol	8.7	23.37
Zm00001d006366_P001	Maize	cytosol	0.43	1.29
Zm00001d033961_P001	Maize	cytosol	0.43	1.29

Protein Annotations

Gene3D:1.25.40.10	MapMan:11.3.2.5	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR013766	InterPro:IPR019734	UniProt:K4CGU1	PFAM:PF00085
PFAM:PF00515	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF402
SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF52833	EnsemblPlantsGene:Solyc07g062580.2	EnsemblPlants:Solyc07g062580.2.1	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000276B840
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:65259956..65263961

Molecular Weight (calculated)

76016.9 Da

IEP (calculated)

9.123

GRAVY (calculated)

-0.424

Length

701 amino acids

Sequence
(BLAST)

001: MSESGRPMSE IGLDGVTDRL KNSLTCAEDG NGVEINKPDF RELDLGSPVS PLRNRPRGFT ATTTTTTTTT TTTTTTTSSS SNSSGSGSVS GRNGSHLGRK
101: KSESSHSGEL SSSVESSPKA RGFKPGHARS YSSGGIAVNS PPLNVLPTGN ICPSGKILKT GMASKSSKTD VLGSGTGYYG HGSIMRGGTG VKPGGGAVGG
201: VDAGATQTAN LRGVMAGDTM KRGMLNTDPE ELKRLGNENY KKGYFVEALN LYDKAIAISP GNAAYHCNRA AALIGLKRLP EAVRECEEAI RLDPSYVRAH
301: HRLGSLLLSF GQVEKARSHI CFQGHQPDQA ELQKLQAVEK YIVKFTDARR VGDWTRTLRE VNAAIASGAD ASPQLFACRA EALLKLHQVE DAELSLSITR
401: KHEPSTGGSP ESKIFGMLSE AYVFFVQAQI DLAMGRFESA ISSVERAGHI DPRNIEVSVF LNNTRSVGRA RTRGNDLFKS ERYTEACAAY GEGLRRDSSN
501: SVLYCNRAAC WYKLGQWEKA VDDCNRALTF QPHYTKALLR RAASNTKLER WAEAVRDYEV LRKALPYDTE VAESLFHAQV ALKKSRGEDI HNMKFGGEVE
601: LVSGLEQFQA AISSPCASVV HFKAASNLQC KQISPFLDTL TTKYPSINFL KVDVEESPSI ANAENVRIVP TFKIYKKGSR VKEMICPSQE VLESSVRHYS
701: I

Best Arabidopsis Sequence Match ( AT1G53300.1 )
(BLAST)

001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG

Arabidopsis Description

TTL1TPR repeat-containing thioredoxin TTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.