Factsheet for VIT_19s0014g01470.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21985	Soybean	cytosol	71.57	71.68
KRH27330	Soybean	cytosol	71.86	71.35
KRH26223	Soybean	nucleus	68.25	69.97
KRH55099	Soybean	nucleus	67.39	68.88
PGSC0003DMT400032362	Potato	cytosol	66.09	65.43
Solyc07g062580.2.1	Tomato	cytosol	65.37	64.62
Bra038116.1-P	Field mustard	cytosol	59.74	62.92
VIT_12s0028g02240.t01	Wine grape	cytosol	64.21	62.68
CDY25865	Canola	cytosol	59.45	62.61
CDY45930	Canola	cytosol	59.16	62.22
Bra030946.1-P	Field mustard	cytosol, plastid	59.88	61.94
CDY02514	Canola	cytosol, plastid	59.88	61.94
CDY25722	Canola	cytosol, plastid	59.45	61.77
VIT_18s0001g09830.t01	Wine grape	cytosol	23.38	61.36
PGSC0003DMT400054803	Potato	cytosol	25.97	61.22
AT1G53300.1	Thale cress	cytosol	60.61	60.09
GSMUA_Achr4P08560_001	Banana	cytosol	58.3	58.98
GSMUA_Achr10P...	Banana	cytosol	56.71	58.92
GSMUA_Achr7P24480_001	Banana	cytosol	54.98	58.71
HORVU1Hr1G093390.2	Barley	cytosol	54.11	55.72
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	40.4	55.67
Os01t0218200-00	Rice	plastid	53.97	55.65
EES01073	Sorghum	cytosol	54.11	55.07
TraesCS3B01G162100.1	Wheat	cytosol	53.25	54.91
Zm00001d039362_P002	Maize	cytosol	52.96	54.78
TraesCS1B01G462300.1	Wheat	cytosol	54.83	54.76
TraesCS1A01G427400.1	Wheat	cytosol	54.98	54.66
TraesCS3A01G143000.1	Wheat	cytosol	52.96	54.61
TraesCS1D01G437100.1	Wheat	nucleus	54.98	54.58
TraesCS3D01G144600.1	Wheat	cytosol	53.1	54.52
TraesCS3D01G231300.1	Wheat	cytosol, mitochondrion	53.97	54.36
EES02247	Sorghum	plastid	53.54	54.24
Zm00001d008930_P003	Maize	cytosol	52.81	54.22
TraesCS3A01G221800.1	Wheat	cytosol	53.82	54.22
TraesCS3B01G251600.1	Wheat	cytosol, mitochondrion	53.82	54.22
Zm00001d044479_P001	Maize	cytosol	53.25	54.19
PGSC0003DMT400054902	Potato	cytosol	23.38	54.18
GSMUA_Achr3P25160_001	Banana	cytosol	55.41	53.93
Os05t0210600-01	Rice	cytosol	31.02	53.62
HORVU3Hr1G054240.2	Barley	cytosol, mitochondrion	52.96	53.34
Zm00001d011352_P001	Maize	cytosol	52.38	53.3
PGSC0003DMT400054904	Potato	cytosol	46.18	52.98
PGSC0003DMT400054796	Potato	cytosol, plastid	46.18	52.03
OQU78515	Sorghum	cytosol	52.38	51.86
HORVU3Hr1G027650.2	Barley	mitochondrion	49.35	51.35
CDY34224	Canola	cytosol	5.05	50.72
Solyc10g007240.1.1	Tomato	cytosol	43.43	50.67
Os05t0587300-01	Rice	cytosol	39.97	49.91
GSMUA_AchrUn_...	Banana	cytosol	19.19	49.63
PGSC0003DMT400054911	Potato	cytosol	37.23	49.52
Solyc10g007230.1.1	Tomato	cytosol	42.57	49.5
AT3G14950.1	Thale cress	cytosol	51.23	48.63
PGSC0003DMT400054909	Potato	cytosol	28.86	48.54
Solyc10g007420.2.1	Tomato	cytosol	29.29	47.76
Bra023795.1-P	Field mustard	cytosol	6.06	47.73
Solyc10g007220.1.1	Tomato	cytosol	34.49	47.33
Zm00001d004494_P001	Maize	cytosol, mitochondrion	15.15	47.3
Bra027292.1-P	Field mustard	cytosol	49.78	47.0
CDX97619	Canola	cytosol	49.06	46.9
CDX98517	Canola	cytosol	48.77	46.69
CDY20095	Canola	nucleus	48.92	46.57
CDY32327	Canola	cytosol	48.92	46.5
Bra021583.1-P	Field mustard	nucleus	49.49	45.37
Solyc10g007250.1.1	Tomato	cytosol	18.18	45.16
VIT_08s0007g01480.t01	Wine grape	cytosol	25.4	43.89
Solyc10g007430.1.1	Tomato	cytosol, plastid	23.52	43.12
PGSC0003DMT400091014	Potato	nucleus	37.37	42.67
CDY40820	Canola	mitochondrion	16.74	41.28
CDY34222	Canola	cytosol	18.04	40.58
Bra023793.1-P	Field mustard	cytosol	22.8	38.35
CDY34223	Canola	cytosol	18.04	38.34
Bra023794.1-P	Field mustard	cytosol, nucleus, plastid	17.75	37.73
VIT_00s0304g00060.t01	Wine grape	plastid	38.67	37.59
VIT_18s0001g05380.t01	Wine grape	plastid	36.08	35.36
Zm00001d009724_P009	Maize	cytosol	50.65	32.83
VIT_11s0037g01020.t01	Wine grape	cytosol	7.5	21.31
Zm00001d006366_P001	Maize	cytosol	0.43	1.29
Zm00001d033961_P001	Maize	cytosol	0.43	1.29

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100255533	MapMan:11.3.2.5	Gene3D:3.40.30.10	ProteinID:CCB46262	ProteinID:CCB46262.1
UniProt:F6H2P4	EMBL:FN595229	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005623	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR013766	InterPro:IPR019734	PFAM:PF00085	PFAM:PF00515	PFAM:PF13432
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF374	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF52833	TIGR:TC70065	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat
InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000198584E	ArrayExpress:VIT_19s0014g01470	EnsemblPlantsGene:VIT_19s0014g01470	EnsemblPlants:VIT_19s0014g01470.t01
unigene:Vvi.5530	RefSeq:XP_010644127.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr19:-:1566156..1570258

Molecular Weight (calculated)

75180.2 Da

IEP (calculated)

8.649

GRAVY (calculated)

-0.493

Length

693 amino acids

Sequence
(BLAST)

001: MSHSGKPMSE VGLGAVADRF RETLNCDNNK PDFKELDLGS PVSPLRTRRS GPAGSGVTTT SSSSSSSGSV SCRNANNQLA KRADGAGNNH SGELSGSSES
101: SPTAAESVRS GGASRNFKPG HGRSDSGGAH PLIYSGGGSV NSPSVNVFPT GNICPSGKIL KTGMANRSSR SDVLGSGMGN YGHGSIMRGG AAPKSGDPGV
201: TYSKGNAGCE SAKRAMSSLD PEEVKQAGND QYKRGHFREA LSFYDRAIAL SPGNAAYHSN RAAALTGLHR LPEAVRECEE AVRLDPGYWR AHQRLASLYR
301: RLGQVENARR HLFVPGQQPD PAELQKLLEV EKHLSKCSDA RRIGDWRSAL REGDAAIAAG ADSSPQIFTC RVEAHLKLHQ LDDAESNLSY IPKSEPSGQS
401: SSQAKFFGML SEAYLHFVQA QIEMALGRFE NAVTAVEKAG QIDPRNVEVA VLLNNVRMVA RARARGNDLF KSERFTEACA AYGEGLRLDP SNSVLYCNRA
501: ACYYKLGMWE RSVDDCNQAL YIQPNYMKAL LRRAASYSKL ERWVDAVRDY ELLRRELPND NDVAESLFHA QVALKKSRGE EVYNMKFGGE VEDVSSLEQF
601: KSAISSPGVS IVLFKAATNP QSEQISPFVD TLCGRYPSLS FLKVDVEQSP AIASVENVRI LPTFKIYKNG SRVKEIICPT REVLESSVRH YGF

Best Arabidopsis Sequence Match ( AT1G53300.1 )
(BLAST)

001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG

Arabidopsis Description

TTL1TPR repeat-containing thioredoxin TTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.