CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030946.1-P	Field mustard	cytosol, plastid	100.0	100.0
CDY25722	Canola	cytosol, plastid	95.82	96.25
CDY25865	Canola	cytosol	88.96	90.58
CDY45930	Canola	cytosol	88.21	89.68
AT1G53300.1	Thale cress	cytosol	86.57	82.98
KRH21985	Soybean	cytosol	65.52	63.44
KRH27330	Soybean	cytosol	64.48	61.89
KRH26223	Soybean	nucleus	61.19	60.65
KRH55099	Soybean	nucleus	61.19	60.47
VIT_19s0014g01470.t01	Wine grape	cytosol	61.94	59.88
PGSC0003DMT400032362	Potato	cytosol	59.25	56.71
Solyc07g062580.2.1	Tomato	cytosol	59.1	56.49
GSMUA_Achr10P...	Banana	cytosol	55.37	55.62
PGSC0003DMT400054803	Potato	cytosol	24.18	55.1
CDY34224	Canola	cytosol	5.67	55.07
GSMUA_Achr4P08560_001	Banana	cytosol	54.33	53.14
GSMUA_Achr7P24480_001	Banana	cytosol	51.34	53.0
TraesCS3B01G162100.1	Wheat	cytosol	52.54	52.38
Os01t0218200-00	Rice	plastid	52.54	52.38
Zm00001d039362_P002	Maize	cytosol	51.94	51.94
Zm00001d008930_P003	Maize	cytosol	52.24	51.85
TraesCS3D01G144600.1	Wheat	cytosol	52.09	51.7
TraesCS3A01G143000.1	Wheat	cytosol	51.79	51.64
EES02247	Sorghum	plastid	52.39	51.32
CDX98517	Canola	cytosol	55.22	51.1
CDY20095	Canola	nucleus	55.52	51.1
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	38.36	51.09
CDY32327	Canola	cytosol	55.52	51.03
CDX97619	Canola	cytosol	55.07	50.9
GSMUA_Achr3P25160_001	Banana	cytosol	53.88	50.7
HORVU1Hr1G093390.2	Barley	cytosol	50.9	50.67
Os05t0210600-01	Rice	cytosol	30.3	50.62
Zm00001d044479_P001	Maize	cytosol	51.34	50.51
EES01073	Sorghum	cytosol	51.34	50.51
TraesCS1B01G462300.1	Wheat	cytosol	51.79	50.0
TraesCS1A01G427400.1	Wheat	cytosol	51.79	49.78
TraesCS1D01G437100.1	Wheat	nucleus	51.79	49.71
TraesCS3A01G221800.1	Wheat	cytosol	50.6	49.27
HORVU3Hr1G027650.2	Barley	mitochondrion	48.96	49.25
TraesCS3B01G251600.1	Wheat	cytosol, mitochondrion	50.45	49.13
CDY61202	Canola	cytosol	49.1	49.03
CDY42827	Canola	cytosol	49.1	49.03
TraesCS3D01G231300.1	Wheat	cytosol, mitochondrion	50.3	48.98
OQU78515	Sorghum	cytosol	51.04	48.86
Zm00001d011352_P001	Maize	cytosol	49.55	48.75
HORVU3Hr1G054240.2	Barley	cytosol, mitochondrion	50.0	48.69
CDY49237	Canola	cytosol	48.21	48.43
CDY51514	Canola	cytosol	48.21	48.28
PGSC0003DMT400054902	Potato	cytosol	21.49	48.16
CDX71941	Canola	cytosol	48.36	48.07
CDY55390	Canola	cytosol	47.46	47.53
PGSC0003DMT400054904	Potato	cytosol	42.24	46.85
PGSC0003DMT400054796	Potato	cytosol, plastid	42.84	46.67
Solyc10g007240.1.1	Tomato	cytosol	40.75	45.96
Zm00001d004494_P001	Maize	cytosol, mitochondrion	15.22	45.95
Solyc10g007230.1.1	Tomato	cytosol	40.75	45.81
CDY34222	Canola	cytosol	21.04	45.78
CDY40820	Canola	mitochondrion	18.96	45.2
Os05t0587300-01	Rice	cytosol	37.16	44.86
GSMUA_AchrUn_...	Banana	cytosol	17.76	44.4
PGSC0003DMT400054911	Potato	cytosol	34.18	43.95
PGSC0003DMT400054909	Potato	cytosol	26.87	43.69
Solyc10g007420.2.1	Tomato	cytosol	26.72	42.12
Solyc10g007250.1.1	Tomato	cytosol	17.31	41.58
Solyc10g007220.1.1	Tomato	cytosol	30.45	40.4
PGSC0003DMT400091014	Potato	nucleus	36.12	39.87
Solyc10g007430.1.1	Tomato	cytosol, plastid	22.39	39.68
CDY08814	Canola	cytosol, plastid	24.78	39.52
CDY34223	Canola	cytosol	17.91	36.81
CDY00576	Canola	cytosol	6.12	35.04
CDX78366	Canola	cytosol	23.28	34.98
CDX81156	Canola	cytosol	23.13	34.75
CDX87474	Canola	cytosol	24.78	31.56
CDY40077	Canola	cytosol	27.01	31.48
CDX69861	Canola	cytosol, mitochondrion	26.27	31.43
CDY21634	Canola	cytosol, mitochondrion	26.12	31.25
Zm00001d009724_P009	Maize	cytosol	49.85	31.24
CDX68030	Canola	cytosol	23.73	31.24
CDX88420	Canola	cytosol	24.48	31.18
CDX85779	Canola	cytosol	26.72	31.13
CDX79246	Canola	cytosol	23.58	30.86
CDY68462	Canola	cytosol	26.27	29.88
CDY39682	Canola	cytosol	9.55	23.1
CDX72245	Canola	cytosol	8.66	22.05
CDY65185	Canola	cytosol	9.1	22.02
CDX68662	Canola	endoplasmic reticulum, mitochondrion	2.54	16.67
CDY28190	Canola	extracellular	2.39	15.69
CDX85780	Canola	nucleus	10.15	14.35
Zm00001d033961_P001	Maize	cytosol	0.45	1.29
Zm00001d006366_P001	Maize	cytosol	0.45	1.29

Protein Annotations

Gene3D:1.25.40.10	MapMan:11.3.2.5	Gene3D:3.40.30.10	GO:A0A078EPD7	EnsemblPlants:CDY02514	ProteinID:CDY02514
ProteinID:CDY02514.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	EnsemblPlantsGene:GSBRNA2T00114174001	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR013766	InterPro:IPR019734	PFAM:PF00085	PFAM:PF13181	PFAM:PF13432
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF402	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF52833	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain
UniParc:UPI0002545802	SEG:seg	:	:	:	:

Description

BnaA08g01210D

Coordinates

chrLK031935:-:636544..639939

Molecular Weight (calculated)

72268.9 Da

IEP (calculated)

9.427

GRAVY (calculated)

-0.365

Length

670 amino acids

Sequence
(BLAST)

001: MSPSGKPVPP RDSSLTSEIN KPDFRELDLG SPVSPLRSQP RGLTTTTTTS SSSSSSSGSV TRQHAPVNGR SGSVRGSSQS GSSSGNLRTS QARSDSVTSN
101: SQQPLVSSST QSSATSPATA ANVLPTGNIC PSGKIQLTGM TQSRSRSDVL GSGTGTYGHG SIMRGGGGSG VSPAKPVAPV TVGGSIRSSP AAMLGSDAEE
201: VKRVGNEMYR KGLFGEALKL YDRAIALSPA NAAYRSNRAA ALTGLGRVGE AVKECEEALR LDPNYGRAHQ RLASLLIRLG QVDNARKHLC VLGKPSDPME
301: LQKLEAVEKH ISKCADARKL GDWKAALMGV DAAIVAGADF SPQLGMCKVE ALLKLHRLDA AQSKLLEALK VEPFPASCSQ TRFSGIACEA YTYFVKAQIE
401: MALGRFENAV MAAEKASKLD PRSNEVAMLH NTVTLVARSR VRGNDLYKSE RYTEASSAYA EGLRLDPCNA ILYCNRAACW FKLGMWERSI EDCNHALRFQ
501: PRYTKPLLRR AASNSKVERW AAAVSDYEAL RKELPHDKEV AESLFHAQVA LKKSRGEEVL NMEFGGEVEE VYSREQFKAA MNLPGVSVIH FSTASDHQCK
601: QLSPFVDSLC TRYPSIHFLK VDIDKCPSIG NAENVRVVPT VKIYKNGTRV KEIVCPSKEV LEYSVRHYSS

Best Arabidopsis Sequence Match ( AT1G53300.1 )
(BLAST)

001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG

Arabidopsis Description

TTL1TPR repeat-containing thioredoxin TTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.