CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87474	Canola	cytosol	94.68	94.68
CDX79246	Canola	cytosol	83.84	86.13
CDX68030	Canola	cytosol	82.32	85.07
AT1G78120.1	Thale cress	cytosol	85.17	84.53
KRH15375	Soybean	cytosol	23.76	50.0
KRH08675	Soybean	cytosol, mitochondrion, plastid	28.33	44.35
Os02t0753500-01	Rice	cytosol	23.95	43.15
CDY08814	Canola	cytosol, plastid	33.27	41.67
PGSC0003DMT400022057	Potato	plastid	33.84	40.73
HORVU4Hr1G024490.1	Barley	cytosol	24.52	40.31
CDX78366	Canola	cytosol	33.65	39.69
CDX81156	Canola	cytosol	32.51	38.34
KRH62368	Soybean	cytosol	44.49	35.78
GSMUA_Achr11P...	Banana	plastid	38.78	34.87
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	38.59	34.7
KRH53085	Soybean	cytosol	45.63	34.38
Solyc04g073940.2.1	Tomato	cytosol	35.17	34.07
Zm00001d018088_P001	Maize	cytosol	38.21	34.07
KXG30730	Sorghum	cytosol, plastid	38.21	34.07
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	36.88	33.86
CDX85779	Canola	cytosol	36.31	33.22
CDY40077	Canola	cytosol	36.31	33.22
CDY21634	Canola	cytosol, mitochondrion	35.36	33.21
CDX69861	Canola	cytosol, mitochondrion	35.36	33.21
PGSC0003DMT400045666	Potato	cytosol	34.41	33.21
GSMUA_Achr3P24690_001	Banana	cytosol	42.02	32.55
CDY68462	Canola	cytosol	36.12	32.26
KRH16702	Soybean	nucleus	41.83	31.7
KRH18895	Soybean	cytosol	42.21	31.58
VIT_18s0001g05380.t01	Wine grape	plastid	42.4	31.54
TraesCS6A01G301400.1	Wheat	mitochondrion	35.55	31.48
HORVU6Hr1G074660.5	Barley	plastid	37.07	31.25
CDY40820	Canola	mitochondrion	14.83	27.76
CDY34224	Canola	cytosol	3.61	27.54
CDY34222	Canola	cytosol	15.4	26.3
CDY42827	Canola	cytosol	32.7	25.63
CDY61202	Canola	cytosol	32.51	25.48
CDY55390	Canola	cytosol	32.13	25.26
CDY34223	Canola	cytosol	15.59	25.15
CDY51514	Canola	cytosol	31.94	25.11
CDX71941	Canola	cytosol	32.13	25.07
CDY49237	Canola	cytosol	31.75	25.04
CDY25722	Canola	cytosol, plastid	31.56	24.89
CDY02514	Canola	cytosol, plastid	31.18	24.48
CDY45930	Canola	cytosol	30.04	23.98
CDY25865	Canola	cytosol	29.85	23.86
CDX97619	Canola	cytosol	31.75	23.03
CDX98517	Canola	cytosol	31.37	22.79
CDY32327	Canola	cytosol	30.61	22.09
CDY20095	Canola	nucleus	30.23	21.84
CDY39682	Canola	cytosol	10.08	19.13
CDY65185	Canola	cytosol	9.7	18.41
CDX72245	Canola	cytosol	9.13	18.25
CDX85780	Canola	nucleus	9.7	10.76
CDX68662	Canola	endoplasmic reticulum, mitochondrion	1.33	6.86
CDY28190	Canola	extracellular	1.33	6.86
CDY00576	Canola	cytosol	1.14	5.13

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX88420	ProteinID:CDX88420	ProteinID:CDX88420.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00147960001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	PFAM:PF13181	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF360
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0004EEF162
SEG:seg	:	:	:	:	:

Description

BnaC06g38640D

Coordinates

chrLK031855:-:916267..919776

Molecular Weight (calculated)

59375.9 Da

IEP (calculated)

9.924

GRAVY (calculated)

-0.606

Length

526 amino acids

Sequence
(BLAST)

001: MAKAKKISTD QRLGCESLLG CIFQSWSPRR RKPSLPEKDH KAKDYLPPKS TTITNPKVIP KKSTDSLAQT KRQDPLKTKP DETNARKSSD SARKSSESAR
101: KSLSSASPRI ESKRFSPNGV MGNIIVKPQP AVKSPDVAQT RSRWEGKTVN YRHDPETLKR MGNEEYCRGR FGEALVFYER AILADPKTPT YWSNKSAALI
201: SLGRLLEASD ACEEALRLNP SYERAHQRLA SLRLRLGEVE KALCHYNQAG KYTETKHIEQ VEDVIKCLRR CDEARRSKEW NVVLKETCFV ISYGADSSPR
301: VYALQTEALL HLQRQEEAYD VYQKGTKRFD IDCFIKNFGL SITSYILMVG AQVYIAAGRF EDAVTASRQA ARLDPSNVEV NAVARKARAV AAARLTGNLL
401: FNASKFEAAC VVYTEGLEKE PCNALLLCNR AASRFKLGLF EKAIEDSTLA LNLQPSYRKA RRRKADSYAK LEKWQHAIQD YELLMMETPE DEETRRVLAD
501: ANVRFRKQTS EGVRFKGVGS DLVVVN

Best Arabidopsis Sequence Match ( AT1G78120.1 )
(BLAST)

001: MAKSKKISTG QIFGCESLLG CIFQSWSPRR RKPSLPEKDH RAKDNLSSKS STTVTNPKIL PRKSTDTSSQ PKKSDSQKPQ QKPKPDENHP RKSSESARKS
101: SDSARKSISS GSSRTESKRF SLNGVMGNII VKPQPAVKTD VTQTKSRWEG KPVNHRLDPE TLKKMGNEEY CRGRFGQALV FYERAISADP KTPTYWSNKS
201: AALISLGRLL EASDACEEAL RLNPTYERAH QRLASLQLRL GEVEKALCHY NEAGKYTETK HIEQVEDVVK CLRRCDEARR SKEWNVALKE TLFAISYGAD
301: SSPRVYALQT EALLHLQRHE EAYSVYQKGT KRFDIDSFIK IFGLSLTSYL LMVGAQVYIA VGRFEDAVTA SRQAARLDPS SEEVNAVARK ARAVASARLS
401: GNLLFNASKF EGASVVYTEG LENDPYNALL LCNRAASRFK LDLFEKAIED CTLALSLQPS YRKARRRRAD SYAKLEKWQH AIQDYELLMM ETPEDEETRR
501: ALTEVNVRFK KQTGGDVRFK GVGSELVVAN

Arabidopsis Description

TPR12TPR12 [Source:UniProtKB/TrEMBL;Acc:A0A178W863]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.