CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16702	Soybean	nucleus	87.77	88.9
KRH62368	Soybean	cytosol	65.29	70.18
KRH53085	Soybean	cytosol	67.85	68.34
KRH15375	Soybean	cytosol	23.76	66.8
KRH08675	Soybean	cytosol, mitochondrion, plastid	29.3	61.31
VIT_18s0001g05380.t01	Wine grape	plastid	54.62	54.31
Os02t0753500-01	Rice	cytosol	19.77	47.6
KRH59356	Soybean	plastid	27.88	45.69
PGSC0003DMT400022057	Potato	plastid	27.45	44.16
HORVU4Hr1G024490.1	Barley	cytosol	19.77	43.44
CDX79246	Canola	cytosol	31.58	43.36
AT1G78120.1	Thale cress	cytosol	32.57	43.21
Bra003657.1-P	Field mustard	cytosol	31.44	43.16
KRH43206	Soybean	cytosol, plastid	33.43	42.88
CDX68030	Canola	cytosol	30.58	42.24
CDX88420	Canola	cytosol	31.58	42.21
Bra015628.1-P	Field mustard	cytosol	31.58	42.21
Solyc04g073940.2.1	Tomato	cytosol	32.57	42.17
PGSC0003DMT400045666	Potato	cytosol	32.57	42.02
CDX87474	Canola	cytosol	31.44	42.02
KRH31282	Soybean	plastid	33.85	40.89
GSMUA_Achr3P24690_001	Banana	cytosol	39.12	40.5
KRG97591	Soybean	plastid	31.44	40.33
GSMUA_Achr11P...	Banana	plastid	33.29	40.0
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	30.3	36.41
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	29.02	35.6
KRH22291	Soybean	plastid	29.3	35.27
KXG30730	Sorghum	cytosol, plastid	29.59	35.25
KRH55099	Soybean	nucleus	33.71	34.96
Zm00001d018088_P001	Maize	cytosol	29.3	34.92
KRH26223	Soybean	nucleus	33.57	34.91
KRH21985	Soybean	cytosol	33.0	33.53
KRH27330	Soybean	cytosol	33.14	33.38
TraesCS6A01G301400.1	Wheat	mitochondrion	28.16	33.33
HORVU6Hr1G074660.5	Barley	plastid	29.02	32.69
KRH27037	Soybean	nucleus	30.01	31.26
KRH09945	Soybean	cytosol, endoplasmic reticulum	1.99	24.14
KRH23391	Soybean	cytosol	6.12	24.02
KRG99844	Soybean	cytosol	8.96	23.51
KRH46794	Soybean	cytosol	7.82	19.93

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100791862	Gene3D:3.40.30.10	MapMan:35.1	EMBL:ACUP02008144	ncoils:Coil
EnsemblPlantsGene:GLYMA_13G088400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623
GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0045454	UniProt:I1LVZ4	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR013766	InterPro:IPR019734	EnsemblPlants:KRH18895	ProteinID:KRH18895	ProteinID:KRH18895.1
PFAM:PF00085	PFAM:PF07719	PFAM:PF13431	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904
PANTHER:PTHR22904:SF360	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF52833	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_2	InterPro:TPR_repeat	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	UniParc:UPI000233BC4D	SEG:seg

Description

hypothetical protein

Coordinates

chr13:-:20228085..20231887

Molecular Weight (calculated)

78684.9 Da

IEP (calculated)

9.833

GRAVY (calculated)

-0.548

Length

703 amino acids

Sequence
(BLAST)

001: MEMKAKNNNN KNKVGSELGC GLMGRILHLK SHKMRKASVH SLPLKNAHSD DDDVKTEESK VARKSFTHTE PPHKLSGAEQ KPARMSVSII HHQQQQPCTN
101: RNNQHLRHSD VAARSSTSSF TSTSISSHTK FQQNQDKDHE RKPRGDPTGN SLALARISTS KENNENKKSQ LKLTGNLLVN NTPRRKSVEY MPKSAELNSV
201: RSSYTNASKV LMGNIMRRNS NSNEVAQFLS PRLKKMDPEV LKSMGNEAYK QGRFEEALAL YDQAIALDLN KAVYHCNKSA ALIGLGRLQE AIVECEESIK
301: LDPSYVRAYN RLATIYVRLG EAEKALDCNQ SIPYVDSILA FQAQALQNHL NKCIEARKVN AWSDILKETQ FAISLGADSA PQVYALQTEA LLKLLRYQEA
401: YVIYDKMPKF SIDWCTKMFG PARSAYLLVI GSMVYLASGR FEEAVASTQQ AAKVDPGNRE VNAMVRKARA ATSARMSGNL LFKASKFTEA SGAYNEGLEH
501: DPHNSVLLCN RAACRSKLGQ NEKAIEDCNA ALMVQPGYSK ARLRRADCNA KLERWEAAIQ DYEMLLRERP GDEEVARALF EAQLQLKVLH GEDIKDLKFG
601: SNLVSISSND RFRHYVTSPG MAVVLFSNKT THKKVLLVLE QISKRFPSVN FLKVEIEDHP YLAKSEGVSS IPAFKIYKNG SRVKEISGNN HELLERSVKL
701: YSS

Best Arabidopsis Sequence Match ( AT1G53300.1 )
(BLAST)

001: MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL
101: RPRSDSATTS SSSHSQPLLS SSSSSATSPA PTSPANVLPT GNICPSGKIQ ITGMTQSRSR SDVLGSGTGT YGHGSIMRGG GISPAKPTNT GGGSNSPVNV
201: GSSSRSSSTV ATGETPIWKK AILGSDSEEV KRVGNEMYRK GLFNEALKLY DRAIALSPTN AAYRSNRAAA LIGLSRIGEA VKECEDAVRS DPNYGRAHHR
301: LALLLIRLGQ VNSARKHLCF LGRPSDPMEL QKLEAVEKHL IKCVDARRVT DWKTVLIEAD AAIVSGADFS PQLFMCKVEA FLKLHRLDDA QSKLLEVPKV
401: EPFPVSCSQT RFSGMACEAY IYFVKAQIEM ALGRFENAVM AAEKASQIDP RCNEVAMLHN TVTLVARARA RGNDLYKSER YTEASSAYAE GLRLDPCNAI
501: LYCNRAACWF KLGMWERSIE DCNQALRYQP SYTKPLLRRA ASNSKMERWG AAVSDYEALI RELPHDKEVA ESLFHAQVAL KKSRGEEVLN MEFGGEVEEI
601: YSLEQFKSAM NLPGVSVIHF STASDHQCKQ ISPFVDSLCT RYPSIHFLKV DIDKCPSIGN AENVRVVPTV KIYKNGSRVK EIVCPSKEVL EYSVRHYSG

Arabidopsis Description

TTL1TPR repeat-containing thioredoxin TTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAH1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.