Factsheet for GSMUA_Achr3P24690_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G024490.1	Barley	cytosol	24.74	52.5
CDY08814	Canola	cytosol, plastid	31.52	50.95
KRH59356	Soybean	plastid	31.81	50.35
GSMUA_Achr11P...	Banana	plastid	43.0	49.91
VIT_00s0304g00060.t01	Wine grape	plastid	51.1	48.67
Bra006046.1-P	Field mustard	cytosol	31.81	48.43
CDX78366	Canola	cytosol	31.81	48.43
CDX81156	Canola	cytosol	31.66	48.21
Solyc04g055000.2.1	Tomato	cytosol	40.5	46.85
KRH15375	Soybean	cytosol	17.23	46.8
KRH43206	Soybean	cytosol, plastid	37.7	46.72
KRG97591	Soybean	plastid	37.26	46.17
KRH08675	Soybean	cytosol, mitochondrion, plastid	22.68	45.83
PGSC0003DMT400022057	Potato	plastid	29.46	45.77
KRH31282	Soybean	plastid	38.88	45.36
VIT_18s0001g05380.t01	Wine grape	plastid	46.98	45.12
PGSC0003DMT400053133	Potato	cytosol, plastid	39.62	44.91
AT5G10090.1	Thale cress	cytosol	37.7	43.1
AT5G65160.1	Thale cress	cytosol	37.41	42.83
Bra024360.1-P	Field mustard	mitochondrion	36.67	42.49
CDY40077	Canola	cytosol	35.79	42.26
CDX85779	Canola	cytosol	35.64	42.09
CDX88420	Canola	cytosol	32.55	42.02
CDY68462	Canola	cytosol	36.38	41.94
KRH62368	Soybean	cytosol	40.21	41.74
Bra003657.1-P	Field mustard	cytosol	31.37	41.6
CDX79246	Canola	cytosol	31.37	41.6
AT1G78120.1	Thale cress	cytosol	32.25	41.32
Bra015628.1-P	Field mustard	cytosol	31.81	41.06
Bra009058.1-P	Field mustard	cytosol, mitochondrion	33.73	40.89
CDX69861	Canola	cytosol, mitochondrion	33.73	40.89
CDX87474	Canola	cytosol	31.66	40.87
CDY21634	Canola	cytosol, mitochondrion	33.58	40.71
CDX68030	Canola	cytosol	30.49	40.67
KRH16702	Soybean	nucleus	40.65	39.77
KRH18895	Soybean	cytosol	40.5	39.12
KRH53085	Soybean	cytosol	39.76	38.68
Solyc04g073940.2.1	Tomato	cytosol	30.34	37.94
PGSC0003DMT400045666	Potato	cytosol	30.19	37.61
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	26.95	36.38
GSMUA_Achr4P08560_001	Banana	cytosol	36.23	35.91
GSMUA_Achr7P24480_001	Banana	cytosol	33.73	35.29
GSMUA_Achr10P...	Banana	cytosol	34.32	34.93
GSMUA_Achr3P25160_001	Banana	cytosol	35.2	33.57
GSMUA_AchrUn_...	Banana	cytosol	9.57	24.25
Bra028602.1-P	Field mustard	cytosol	35.49	22.13
GSMUA_Achr2P02050_001	Banana	cytosol	7.07	21.05

Protein Annotations

Gene3D:1.25.40.10	Gene3D:3.40.30.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr3G24690_001	EnsemblPlants:GSMUA_Achr3P24690_001	EnsemblPlants:GSMUA_Achr3T24690_001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	UniProt:M0SHI5	PFAM:PF00515	PFAM:PF13181	PFAM:PF13414	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF360	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF52833
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	InterPro:Thioredoxin-like_sf	UniParc:UPI0002954D5E
SEG:seg	:	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_304.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr3G24690_001]

Coordinates

chr3:+:25146777..25149474

Molecular Weight (calculated)

73365.0 Da

IEP (calculated)

9.319

GRAVY (calculated)

-0.448

Length

679 amino acids

Sequence
(BLAST)

001: MEEEDGKKVS GCGLLVLYNN IFRRGTASSS PGHPTSAAES PKLTASDSKR RRAASDEASL LVPANASHLP VAPAPQNPKA VAPGYLKASG RPAGAPAGNA
101: GRARNLGLAG ELDSMINDHQ RSMGSSTLVR ASSGNVMVFS NLGNIRAPGA VTPNRNVLDF LPKTASEKGG IPDGNQGPRY TNGPAGHAPN SSAVEVAAPE
201: GLCRALSKRL EPEELKEMGN EEYKKGRYAE AVALYDRAIL IDPGKASYWS NKAAALMAMG HLLEAVSDCR EAVRIDPSYA RAHRRLATLY LRLGEAEKAI
301: HHFKLARNET TSEDIAQVHR LQNHLSKCNE ARKLRDWHSV LKEARSAVSS GADSSPQIVA AHVEALLALG RQEEAETTLN CAPKFNIDAS TKFFGASRSA
401: HLLSVRAQIH LATGRFEDAV AVAQKAAQIE PSSREVGAVA RKTRAVASAR LTGNDLFKAS KFREACVAYG EGLHHDPQNA ILLCNRAACR SKLGQWEKAI
501: EDCNAALNMR PSYTKARLRR ADCNAKLERW EASVQDYEAL IDQLPGDEEV GKALSEARQQ LKKQRGEGSM DTKVGANFVR VTNKDQLKQF IMAPGITVAL
601: VFNKSSELPS QTIPFMEKMS KQHPTVNFLA MDLSQSPLLE EYGSYGPVAF KVYKNGSTVK DIDGLDQEQL ESSLRALSK

Best Arabidopsis Sequence Match ( AT5G65160.1 )
(BLAST)

001: MEENTAVAAA ERRSGCGLLS VMFGRRGLWS KKSTAVDNGS QKSTSTAATA TSNIQFTKSP GTELKKPRDD QKVSAEPIQN NKIQNNQNHN QRSVVPSKPS
101: SNQYPNNHQL GTYENHQRSS YNNNSNSVDP YRGGGGQRKV PREAIGLSGE LESMITDHQK AKGTNGLVRA SSSNIMLYGN LGNLNQTGPV TAGVNYGNNN
201: GYGVKRTTMG AATATTTKSQ DQSGSLCRAI STRMDPETLK IMGNEDYKNG NFAEALALYD AAIAIDPNKA AYRSNKSAAL TALGRILDAV FECREAIRIE
301: PHYHRAHHRL GNLYLRLGEV EKSIYHFKHS GPEADREDIA KAKTVQTHLN KCTEAKRLRD WNGLITETTN TISSGADAAP QVYALQAEAL LKTHRHQEAD
401: DALSRCPVFD IDASTRYYGP VGYAGFLVVR AQVHLASGRF DEAVEAIQRA GKLDGNNREV IMISRRAQAV TEARFKGNEL FKSGRFQEAC AAYGEGLDHD
501: PRNSVLLCNR AACRSKLGQF DKSIEDCTAA LSVRPGYGKA RLRRADCNAK IEKWELAVGD YEILKKESPE DEQVIRGLSE AQQQLMKRSG QDS

Arabidopsis Description

TPR14At5g65160 [Source:UniProtKB/TrEMBL;Acc:Q9FJQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.