Factsheet for Bra024360.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 2
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08814	Canola	cytosol, plastid	71.67	100.0
AT5G65160.1	Thale cress	cytosol	88.57	87.52
Bra006046.1-P	Field mustard	cytosol	54.27	71.3
Bra009058.1-P	Field mustard	cytosol, mitochondrion	67.06	70.18
KRH59356	Soybean	plastid	42.49	58.04
KRH43206	Soybean	cytosol, plastid	51.71	55.29
KRH31282	Soybean	plastid	53.75	54.12
KRG97591	Soybean	plastid	50.0	53.47
Solyc04g055000.2.1	Tomato	cytosol	50.51	50.43
Os02t0753500-01	Rice	cytosol	24.91	50.0
PGSC0003DMT400053133	Potato	cytosol, plastid	51.02	49.92
VIT_00s0304g00060.t01	Wine grape	plastid	57.17	46.98
HORVU4Hr1G024490.1	Barley	cytosol	24.74	45.31
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	41.47	42.41
GSMUA_Achr11P...	Banana	plastid	42.32	42.39
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	42.15	42.22
KXG30730	Sorghum	cytosol, plastid	42.32	42.03
Zm00001d018088_P001	Maize	cytosol	41.98	41.69
TraesCS6A01G301400.1	Wheat	mitochondrion	39.93	39.39
HORVU6Hr1G074660.5	Barley	plastid	41.13	38.62
Bra015628.1-P	Field mustard	cytosol	32.94	36.69
GSMUA_Achr3P24690_001	Banana	cytosol	42.49	36.67
Bra028602.1-P	Field mustard	cytosol	66.89	36.0
Bra003657.1-P	Field mustard	cytosol	31.06	35.55
Bra038116.1-P	Field mustard	cytosol	31.57	28.12
Bra007405.1-P	Field mustard	cytosol	31.74	27.64
Bra000267.1-P	Field mustard	cytosol	31.57	27.53
Bra004709.1-P	Field mustard	cytosol	30.2	26.94
Bra030946.1-P	Field mustard	cytosol, plastid	30.2	26.42
Bra023793.1-P	Field mustard	cytosol	16.21	23.06
Bra023795.1-P	Field mustard	cytosol	3.41	22.73
Bra023794.1-P	Field mustard	cytosol, nucleus, plastid	12.29	22.09
Bra027292.1-P	Field mustard	cytosol	27.47	21.93
Bra021583.1-P	Field mustard	nucleus	27.47	21.3
Bra032136.1-P	Field mustard	cytosol	8.02	16.97
Bra011197.1-P	Field mustard	cytosol	0.34	2.44

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra024360	EnsemblPlants:Bra024360.1	EnsemblPlants:Bra024360.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M4E6F6
PFAM:PF07719	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF360	SMART:SM00028
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2	InterPro:TPR_repeat	UniParc:UPI000253F4F6
SEG:seg	:	:	:	:	:

Description

AT5G65160 (E=8e-271) | tetratricopeptide repeat (TPR)-containing protein

Coordinates

chrA06:-:15195046..15197249

Molecular Weight (calculated)

64513.6 Da

IEP (calculated)

9.280

GRAVY (calculated)

-0.701

Length

586 amino acids

Sequence
(BLAST)

001: MGENAAQRRS GCGLLSVMFG RRNLWSKKPT PTDNGSQKST STAATATSNI QFTKSPGNDL KKPHHDVKVS VETIQNNKIQ NQNQRSVVPS KPSSNQYPNN
101: HQLGTYENQQ RSSYNNNSSS VDPYRGGQRK VPREAIGLSG ELESMITDHQ KSRGANGLVR ASSSNVMLYG NLGNLNQSGP ATTLGYGNVN SGGGYVATRT
201: NVAAPATVTT KSQDQSGSLC RAISTRMDPE TLKIMGNEDY KNGNFAEALA LYDAAIAIDP NKAAYRSNKS AALTALGRIL DAVFECREAI RIEPHYHRAH
301: HRLGNLYLRL GEVEKSIYHF KHSGPEADPE DIVKAKAVQT HLNKCTEAKR LRDWNGLITE TTNTISSGAD AAPQVYALQA EALLKTHRHQ EADDALSKCP
401: VFDVETSTRY YGPVGYAGFL VVRAQVHLAS GRFDEAVEAI QRAGQLDGNN REVAMVSRRA QAVTEARFRG NELFKDGRFE EACAAYGEGL DHDPRNSVLL
501: CNRAACRSKL GQFEKSVDDC TAAISVRPGY RKARLRRVDC NTKMRKWELV VADYEILKKE TPEDEEVTRG LSEAQQQLMK RRGQDS

Best Arabidopsis Sequence Match ( AT5G65160.1 )
(BLAST)

001: MEENTAVAAA ERRSGCGLLS VMFGRRGLWS KKSTAVDNGS QKSTSTAATA TSNIQFTKSP GTELKKPRDD QKVSAEPIQN NKIQNNQNHN QRSVVPSKPS
101: SNQYPNNHQL GTYENHQRSS YNNNSNSVDP YRGGGGQRKV PREAIGLSGE LESMITDHQK AKGTNGLVRA SSSNIMLYGN LGNLNQTGPV TAGVNYGNNN
201: GYGVKRTTMG AATATTTKSQ DQSGSLCRAI STRMDPETLK IMGNEDYKNG NFAEALALYD AAIAIDPNKA AYRSNKSAAL TALGRILDAV FECREAIRIE
301: PHYHRAHHRL GNLYLRLGEV EKSIYHFKHS GPEADREDIA KAKTVQTHLN KCTEAKRLRD WNGLITETTN TISSGADAAP QVYALQAEAL LKTHRHQEAD
401: DALSRCPVFD IDASTRYYGP VGYAGFLVVR AQVHLASGRF DEAVEAIQRA GKLDGNNREV IMISRRAQAV TEARFKGNEL FKSGRFQEAC AAYGEGLDHD
501: PRNSVLLCNR AACRSKLGQF DKSIEDCTAA LSVRPGYGKA RLRRADCNAK IEKWELAVGD YEILKKESPE DEQVIRGLSE AQQQLMKRSG QDS

Arabidopsis Description

TPR14At5g65160 [Source:UniProtKB/TrEMBL;Acc:Q9FJQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.