Factsheet for Bra015628.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87474	Canola	cytosol	98.67	98.67
Bra003657.1-P	Field mustard	cytosol	82.7	84.96
AT1G78120.1	Thale cress	cytosol	84.79	84.15
KRH15375	Soybean	cytosol	23.57	49.6
KRH08675	Soybean	cytosol, mitochondrion, plastid	28.33	44.35
Os02t0753500-01	Rice	cytosol	23.95	43.15
PGSC0003DMT400022057	Potato	plastid	33.65	40.5
Bra006046.1-P	Field mustard	cytosol	34.22	40.36
HORVU4Hr1G024490.1	Barley	cytosol	24.52	40.31
KRH62368	Soybean	cytosol	44.87	36.09
GSMUA_Achr11P...	Banana	plastid	38.97	35.04
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	38.4	34.53
KRH53085	Soybean	cytosol	45.82	34.53
KXG30730	Sorghum	cytosol, plastid	38.59	34.41
Solyc04g073940.2.1	Tomato	cytosol	35.17	34.07
Zm00001d018088_P001	Maize	cytosol	38.02	33.9
Bra009058.1-P	Field mustard	cytosol, mitochondrion	35.55	33.39
TraesCS6B01G330500.1	Wheat	mitochondrion, plastid	36.31	33.33
Bra024360.1-P	Field mustard	mitochondrion	36.69	32.94
PGSC0003DMT400045666	Potato	cytosol	34.03	32.84
KRH16702	Soybean	nucleus	42.21	31.99
GSMUA_Achr3P24690_001	Banana	cytosol	41.06	31.81
KRH18895	Soybean	cytosol	42.21	31.58
VIT_18s0001g05380.t01	Wine grape	plastid	42.4	31.54
TraesCS6A01G301400.1	Wheat	mitochondrion	34.98	30.98
HORVU6Hr1G074660.5	Barley	plastid	36.69	30.93
Bra023793.1-P	Field mustard	cytosol	19.77	25.24
Bra000267.1-P	Field mustard	cytosol	32.13	25.15
Bra023795.1-P	Field mustard	cytosol	4.18	25.0
Bra007405.1-P	Field mustard	cytosol	31.94	24.96
Bra030946.1-P	Field mustard	cytosol, plastid	31.37	24.63
Bra004709.1-P	Field mustard	cytosol	30.42	24.35
Bra038116.1-P	Field mustard	cytosol	30.42	24.32
Bra023794.1-P	Field mustard	cytosol, nucleus, plastid	15.02	24.23
Bra027292.1-P	Field mustard	cytosol	31.56	22.62
Bra021583.1-P	Field mustard	nucleus	30.99	21.56
Bra032136.1-P	Field mustard	cytosol	9.89	18.77
Bra028602.1-P	Field mustard	cytosol	36.31	17.54
Bra011197.1-P	Field mustard	cytosol	0.57	3.66

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra015628	EnsemblPlants:Bra015628.1	EnsemblPlants:Bra015628.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
UniProt:M4DGK3	PFAM:PF13176	PFAM:PF13181	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904
PANTHER:PTHR22904:SF360	SMART:SM00028	SUPFAM:SSF48452	TMHMM:TMhelix	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI0002541B83	SEG:seg	:	:	:

Description

AT1G78120 (E=2e-233) | tetratricopeptide repeat (TPR)-containing protein

Coordinates

chrA07:-:21677314..21679846

Molecular Weight (calculated)

59323.8 Da

IEP (calculated)

9.899

GRAVY (calculated)

-0.594

Length

526 amino acids

Sequence
(BLAST)

001: MAKAKKISTD QRLGCESLLG CIFQSWSPRR RKPSLPEKDH KAKDYLPPKS TTITNPKIIP RKSTDSLAQT KRPDPLKTKP DESNARKSSD SARKSSDSAR
101: KSLSSASPRI ESKRFSPNGV MGNIIVKPQP AAKSPDVSQT RSRWEGKTVN YRHDPETLKR MGNEEYCRGR FGEALVFYER AILADPKTPT YWSNKSAALI
201: SLGRLLEASD ACEEALRLNP SYERAHQRLA SLQLRLGEVE KALSHYNQAG KYTETKHIEQ VEDVIKCLKR CEEARRSKEW NVVLKETCFV ISYGADSSPR
301: VYALQTEALL HLQRQEEAND VYQKATKRLD IDCFIKIFGL SITSYILMVG AQVYIAAGRF EDAVTASRQA ARLDPSNVEV NAVARKARAV AAARLTGNLL
401: FNASKFEAAC VVYTEGLEKE PCNALLLCNR AASRFKLGLF EKAIEDSTLA LNLQPSYRKA RRRRADSYAK LEKWQHAIQD YELLMMETPE DEETRRVLAD
501: ANVRFRKHIG GDVRFKEIGS DLVVLN

Best Arabidopsis Sequence Match ( AT1G78120.1 )
(BLAST)

001: MAKSKKISTG QIFGCESLLG CIFQSWSPRR RKPSLPEKDH RAKDNLSSKS STTVTNPKIL PRKSTDTSSQ PKKSDSQKPQ QKPKPDENHP RKSSESARKS
101: SDSARKSISS GSSRTESKRF SLNGVMGNII VKPQPAVKTD VTQTKSRWEG KPVNHRLDPE TLKKMGNEEY CRGRFGQALV FYERAISADP KTPTYWSNKS
201: AALISLGRLL EASDACEEAL RLNPTYERAH QRLASLQLRL GEVEKALCHY NEAGKYTETK HIEQVEDVVK CLRRCDEARR SKEWNVALKE TLFAISYGAD
301: SSPRVYALQT EALLHLQRHE EAYSVYQKGT KRFDIDSFIK IFGLSLTSYL LMVGAQVYIA VGRFEDAVTA SRQAARLDPS SEEVNAVARK ARAVASARLS
401: GNLLFNASKF EGASVVYTEG LENDPYNALL LCNRAASRFK LDLFEKAIED CTLALSLQPS YRKARRRRAD SYAKLEKWQH AIQDYELLMM ETPEDEETRR
501: ALTEVNVRFK KQTGGDVRFK GVGSELVVAN

Arabidopsis Description

TPR12TPR12 [Source:UniProtKB/TrEMBL;Acc:A0A178W863]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.