Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 2
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX88420 | Canola | cytosol | 84.53 | 85.17 |
Bra015628.1-P | Field mustard | cytosol | 84.15 | 84.79 |
CDX87474 | Canola | cytosol | 83.21 | 83.84 |
Bra003657.1-P | Field mustard | cytosol | 78.87 | 81.64 |
CDX68030 | Canola | cytosol | 77.74 | 80.94 |
CDX79246 | Canola | cytosol | 78.11 | 80.86 |
KRH15375 | Soybean | cytosol | 24.34 | 51.6 |
KRH08675 | Soybean | cytosol, mitochondrion, plastid | 29.25 | 46.13 |
Os02t0753500-01 | Rice | cytosol | 24.34 | 44.18 |
PGSC0003DMT400022057 | Potato | plastid | 33.77 | 40.96 |
HORVU4Hr1G024490.1 | Barley | cytosol | 24.72 | 40.94 |
KRH62368 | Soybean | cytosol | 46.04 | 37.31 |
KRH53085 | Soybean | cytosol | 46.98 | 35.67 |
Solyc04g073940.2.1 | Tomato | cytosol | 36.42 | 35.54 |
GSMUA_Achr11P... | Banana | plastid | 39.06 | 35.38 |
PGSC0003DMT400045666 | Potato | cytosol | 36.23 | 35.23 |
Zm00001d052221_P002 | Maize | cytosol, nucleus, plastid | 38.49 | 34.87 |
KXG30730 | Sorghum | cytosol, plastid | 38.3 | 34.41 |
Zm00001d018088_P001 | Maize | cytosol | 38.3 | 34.41 |
TraesCS6B01G330500.1 | Wheat | mitochondrion, plastid | 37.17 | 34.38 |
AT5G65160.1 | Thale cress | cytosol | 37.17 | 33.22 |
VIT_18s0001g05380.t01 | Wine grape | plastid | 44.15 | 33.1 |
AT5G10090.1 | Thale cress | cytosol | 36.98 | 33.0 |
KRH18895 | Soybean | cytosol | 43.21 | 32.57 |
KRH16702 | Soybean | nucleus | 42.64 | 32.56 |
GSMUA_Achr3P24690_001 | Banana | cytosol | 41.32 | 32.25 |
HORVU6Hr1G074660.5 | Barley | plastid | 37.36 | 31.73 |
TraesCS6A01G301400.1 | Wheat | mitochondrion | 35.47 | 31.65 |
AT3G58620.1 | Thale cress | cytosol | 33.02 | 25.66 |
AT2G42580.1 | Thale cress | cytosol | 33.4 | 25.62 |
AT1G53300.1 | Thale cress | cytosol | 32.08 | 24.32 |
AT3G14950.1 | Thale cress | cytosol | 31.13 | 22.6 |
AT4G30480.2 | Thale cress | cytosol | 8.87 | 16.97 |
Protein Annotations
Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:844148 | UniProt:A0A178W863 | ProteinID:AAG52100.1 | ProteinID:AEE36069.1 |
ArrayExpress:AT1G78120 | EnsemblPlantsGene:AT1G78120 | RefSeq:AT1G78120 | TAIR:AT1G78120 | RefSeq:AT1G78120-TAIR-G | EnsemblPlants:AT1G78120.1 |
TAIR:AT1G78120.1 | Unigene:At.34337 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | InterPro:IPR011990 |
InterPro:IPR013026 | InterPro:IPR019734 | RefSeq:NP_177936.1 | ProteinID:OAP13941.1 | PFAM:PF13181 | PO:PO:0000037 |
PO:PO:0000230 | PO:PO:0000293 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 |
PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PFscan:PS50005 |
PFscan:PS50293 | PANTHER:PTHR22904 | PANTHER:PTHR22904:SF360 | UniProt:Q9C9S0 | SMART:SM00028 | SUPFAM:SSF48452 |
InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | Symbol:TPR12 | InterPro:TPR_repeat | UniParc:UPI00000A45D0 | SEG:seg |
Description
TPR12TPR12 [Source:UniProtKB/TrEMBL;Acc:A0A178W863]
Coordinates
chr1:-:29393813..29396105
Molecular Weight (calculated)
59622.7 Da
IEP (calculated)
9.978
GRAVY (calculated)
-0.673
Length
530 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKSKKISTG QIFGCESLLG CIFQSWSPRR RKPSLPEKDH RAKDNLSSKS STTVTNPKIL PRKSTDTSSQ PKKSDSQKPQ QKPKPDENHP RKSSESARKS
101: SDSARKSISS GSSRTESKRF SLNGVMGNII VKPQPAVKTD VTQTKSRWEG KPVNHRLDPE TLKKMGNEEY CRGRFGQALV FYERAISADP KTPTYWSNKS
201: AALISLGRLL EASDACEEAL RLNPTYERAH QRLASLQLRL GEVEKALCHY NEAGKYTETK HIEQVEDVVK CLRRCDEARR SKEWNVALKE TLFAISYGAD
301: SSPRVYALQT EALLHLQRHE EAYSVYQKGT KRFDIDSFIK IFGLSLTSYL LMVGAQVYIA VGRFEDAVTA SRQAARLDPS SEEVNAVARK ARAVASARLS
401: GNLLFNASKF EGASVVYTEG LENDPYNALL LCNRAASRFK LDLFEKAIED CTLALSLQPS YRKARRRRAD SYAKLEKWQH AIQDYELLMM ETPEDEETRR
501: ALTEVNVRFK KQTGGDVRFK GVGSELVVAN
101: SDSARKSISS GSSRTESKRF SLNGVMGNII VKPQPAVKTD VTQTKSRWEG KPVNHRLDPE TLKKMGNEEY CRGRFGQALV FYERAISADP KTPTYWSNKS
201: AALISLGRLL EASDACEEAL RLNPTYERAH QRLASLQLRL GEVEKALCHY NEAGKYTETK HIEQVEDVVK CLRRCDEARR SKEWNVALKE TLFAISYGAD
301: SSPRVYALQT EALLHLQRHE EAYSVYQKGT KRFDIDSFIK IFGLSLTSYL LMVGAQVYIA VGRFEDAVTA SRQAARLDPS SEEVNAVARK ARAVASARLS
401: GNLLFNASKF EGASVVYTEG LENDPYNALL LCNRAASRFK LDLFEKAIED CTLALSLQPS YRKARRRRAD SYAKLEKWQH AIQDYELLMM ETPEDEETRR
501: ALTEVNVRFK KQTGGDVRFK GVGSELVVAN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.