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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • mitochondrion 2
  • cytosol 2
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX88420 Canola cytosol 84.53 85.17
Bra015628.1-P Field mustard cytosol 84.15 84.79
CDX87474 Canola cytosol 83.21 83.84
Bra003657.1-P Field mustard cytosol 78.87 81.64
CDX68030 Canola cytosol 77.74 80.94
CDX79246 Canola cytosol 78.11 80.86
KRH15375 Soybean cytosol 24.34 51.6
KRH08675 Soybean cytosol, mitochondrion, plastid 29.25 46.13
Os02t0753500-01 Rice cytosol 24.34 44.18
PGSC0003DMT400022057 Potato plastid 33.77 40.96
HORVU4Hr1G024490.1 Barley cytosol 24.72 40.94
KRH62368 Soybean cytosol 46.04 37.31
KRH53085 Soybean cytosol 46.98 35.67
Solyc04g073940.2.1 Tomato cytosol 36.42 35.54
GSMUA_Achr11P... Banana plastid 39.06 35.38
PGSC0003DMT400045666 Potato cytosol 36.23 35.23
Zm00001d052221_P002 Maize cytosol, nucleus, plastid 38.49 34.87
KXG30730 Sorghum cytosol, plastid 38.3 34.41
Zm00001d018088_P001 Maize cytosol 38.3 34.41
TraesCS6B01G330500.1 Wheat mitochondrion, plastid 37.17 34.38
AT5G65160.1 Thale cress cytosol 37.17 33.22
VIT_18s0001g05380.t01 Wine grape plastid 44.15 33.1
AT5G10090.1 Thale cress cytosol 36.98 33.0
KRH18895 Soybean cytosol 43.21 32.57
KRH16702 Soybean nucleus 42.64 32.56
GSMUA_Achr3P24690_001 Banana cytosol 41.32 32.25
HORVU6Hr1G074660.5 Barley plastid 37.36 31.73
TraesCS6A01G301400.1 Wheat mitochondrion 35.47 31.65
AT3G58620.1 Thale cress cytosol 33.02 25.66
AT2G42580.1 Thale cress cytosol 33.4 25.62
AT1G53300.1 Thale cress cytosol 32.08 24.32
AT3G14950.1 Thale cress cytosol 31.13 22.6
AT4G30480.2 Thale cress cytosol 8.87 16.97
Protein Annotations
Gene3D:1.25.40.10MapMan:35.1EntrezGene:844148UniProt:A0A178W863ProteinID:AAG52100.1ProteinID:AEE36069.1
ArrayExpress:AT1G78120EnsemblPlantsGene:AT1G78120RefSeq:AT1G78120TAIR:AT1G78120RefSeq:AT1G78120-TAIR-GEnsemblPlants:AT1G78120.1
TAIR:AT1G78120.1Unigene:At.34337ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739InterPro:IPR011990
InterPro:IPR013026InterPro:IPR019734RefSeq:NP_177936.1ProteinID:OAP13941.1PFAM:PF13181PO:PO:0000037
PO:PO:0000230PO:PO:0000293PO:PO:0007611PO:PO:0007616PO:PO:0009005PO:PO:0009006
PO:PO:0009029PO:PO:0009030PO:PO:0009046PO:PO:0009052PO:PO:0020100PFscan:PS50005
PFscan:PS50293PANTHER:PTHR22904PANTHER:PTHR22904:SF360UniProt:Q9C9S0SMART:SM00028SUPFAM:SSF48452
InterPro:TPR-contain_domInterPro:TPR-like_helical_dom_sfSymbol:TPR12InterPro:TPR_repeatUniParc:UPI00000A45D0SEG:seg
Description
TPR12TPR12 [Source:UniProtKB/TrEMBL;Acc:A0A178W863]
Coordinates
chr1:-:29393813..29396105
Molecular Weight (calculated)
59622.7 Da
IEP (calculated)
9.978
GRAVY (calculated)
-0.673
Length
530 amino acids
Sequence
(BLAST)
001: MAKSKKISTG QIFGCESLLG CIFQSWSPRR RKPSLPEKDH RAKDNLSSKS STTVTNPKIL PRKSTDTSSQ PKKSDSQKPQ QKPKPDENHP RKSSESARKS
101: SDSARKSISS GSSRTESKRF SLNGVMGNII VKPQPAVKTD VTQTKSRWEG KPVNHRLDPE TLKKMGNEEY CRGRFGQALV FYERAISADP KTPTYWSNKS
201: AALISLGRLL EASDACEEAL RLNPTYERAH QRLASLQLRL GEVEKALCHY NEAGKYTETK HIEQVEDVVK CLRRCDEARR SKEWNVALKE TLFAISYGAD
301: SSPRVYALQT EALLHLQRHE EAYSVYQKGT KRFDIDSFIK IFGLSLTSYL LMVGAQVYIA VGRFEDAVTA SRQAARLDPS SEEVNAVARK ARAVASARLS
401: GNLLFNASKF EGASVVYTEG LENDPYNALL LCNRAASRFK LDLFEKAIED CTLALSLQPS YRKARRRRAD SYAKLEKWQH AIQDYELLMM ETPEDEETRR
501: ALTEVNVRFK KQTGGDVRFK GVGSELVVAN
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.