Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011197.1-P | Field mustard | cytosol | 27.08 | 91.46 |
| KRH09945 | Soybean | cytosol, endoplasmic reticulum | 17.69 | 84.48 |
| CDX68662 | Canola | endoplasmic reticulum, mitochondrion | 28.16 | 76.47 |
| CDY28190 | Canola | extracellular | 27.8 | 75.49 |
| CDX72245 | Canola | cytosol | 67.15 | 70.72 |
| KRH23391 | Soybean | cytosol | 43.32 | 67.04 |
| KRG99844 | Soybean | cytosol | 59.93 | 61.94 |
| TraesCS5D01G341400.1 | Wheat | cytosol | 49.1 | 59.39 |
| TraesCS5A01G336700.1 | Wheat | cytosol | 49.1 | 59.39 |
| GSMUA_Achr2P02050_001 | Banana | cytosol | 48.74 | 59.21 |
| TraesCS5B01G335700.1 | Wheat | cytosol | 48.74 | 58.95 |
| Solyc07g006180.2.1 | Tomato | cytosol | 55.23 | 58.62 |
| Os10t0486900-01 | Rice | cytosol | 49.1 | 57.63 |
| KXG33951 | Sorghum | cytosol | 49.82 | 54.55 |
| Zm00001d034423_P001 | Maize | cytosol | 48.74 | 54.44 |
| KRH46794 | Soybean | cytosol | 53.43 | 53.62 |
| Zm00001d012121_P002 | Maize | cytosol | 49.1 | 53.33 |
| PGSC0003DMT400029173 | Potato | cytosol | 55.23 | 52.22 |
| VIT_11s0037g01020.t01 | Wine grape | cytosol | 45.49 | 51.64 |
| AT1G53300.1 | Thale cress | cytosol | 23.1 | 9.16 |
| AT3G58620.1 | Thale cress | cytosol | 22.02 | 8.94 |
| AT1G78120.1 | Thale cress | cytosol | 16.97 | 8.87 |
| AT2G42580.1 | Thale cress | cytosol | 21.66 | 8.68 |
| AT5G65160.1 | Thale cress | cytosol | 18.41 | 8.6 |
| AT3G14950.1 | Thale cress | cytosol | 20.94 | 7.95 |
| AT5G10090.1 | Thale cress | cytosol | 16.25 | 7.58 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.2 | EntrezGene:829171 | ProteinID:AEE85770.1 | EMBL:AK316721 | ArrayExpress:AT4G30480 |
| EnsemblPlantsGene:AT4G30480 | RefSeq:AT4G30480 | TAIR:AT4G30480 | RefSeq:AT4G30480-TAIR-G | EnsemblPlants:AT4G30480.2 | TAIR:AT4G30480.2 |
| Unigene:At.31832 | ProteinID:CAB79766.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0051879 |
| InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | RefSeq:NP_194777.3 | PFAM:PF07719 | PFAM:PF13181 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR22904 | PANTHER:PTHR22904:SF356 | UniProt:Q9M0B2 |
| SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | Symbol:TPR1 | InterPro:TPR_2 |
| InterPro:TPR_repeat | UniParc:UPI000009E96D | SEG:seg | : | : | : |
Description
TPR1AT4G30480 protein [Source:UniProtKB/TrEMBL;Acc:Q9M0B2]
Coordinates
chr4:+:14897353..14899121
Molecular Weight (calculated)
30928.0 Da
IEP (calculated)
4.315
GRAVY (calculated)
-0.807
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLIESSESE DEILIKNEPK PASSSSPQPT ETKQVDGDDS DGFETASERE ISDEEGEEDG TKNDAVTSQE EPQHSEKKEE QIELMSEGEA IVDDGSNKEK
101: ALAEANEAKA EGNKLFVNGL YEEALSKYAF ALELVQELPE SIELRSICYL NRGVCFLKLG KCEETIKECT KALELNPTYN KALVRRAEAH EKLEHFEDAV
201: TDLKKILELD PSNDQARKGI RRLEPLAAEK REKMKEEAIT KLKEMGNSIL GRFGMSVDNF KAVKDPNTGS YSLSFQN
101: ALAEANEAKA EGNKLFVNGL YEEALSKYAF ALELVQELPE SIELRSICYL NRGVCFLKLG KCEETIKECT KALELNPTYN KALVRRAEAH EKLEHFEDAV
201: TDLKKILELD PSNDQARKGI RRLEPLAAEK REKMKEEAIT KLKEMGNSIL GRFGMSVDNF KAVKDPNTGS YSLSFQN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.