Factsheet for Zm00001d034423_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33951	Sorghum	cytosol	91.13	89.33
Zm00001d012121_P002	Maize	cytosol	88.71	86.27
KRH09945	Soybean	cytosol, endoplasmic reticulum	19.35	82.76
TraesCS5A01G336700.1	Wheat	cytosol	75.81	82.1
Os10t0486900-01	Rice	cytosol	77.42	81.36
TraesCS5B01G335700.1	Wheat	cytosol	75.0	81.22
TraesCS5D01G341400.1	Wheat	cytosol	74.6	80.79
Bra011197.1-P	Field mustard	cytosol	23.79	71.95
KRH23391	Soybean	cytosol	46.77	64.8
GSMUA_Achr2P02050_001	Banana	cytosol	59.27	64.47
CDX68662	Canola	endoplasmic reticulum, mitochondrion	25.81	62.75
CDY28190	Canola	extracellular	25.4	61.76
KRG99844	Soybean	cytosol	60.08	55.6
Solyc07g006180.2.1	Tomato	cytosol	57.66	54.79
CDY65185	Canola	cytosol	55.65	49.82
Bra032136.1-P	Field mustard	cytosol	55.65	49.82
CDX72245	Canola	cytosol	52.82	49.81
VIT_11s0037g01020.t01	Wine grape	cytosol	48.79	49.59
CDY39682	Canola	cytosol	55.24	49.46
AT4G30480.2	Thale cress	cytosol	54.44	48.74
KRH46794	Soybean	cytosol	53.63	48.19
PGSC0003DMT400029173	Potato	cytosol	56.85	48.12
Zm00001d004494_P001	Maize	cytosol, mitochondrion	14.11	15.77
Zm00001d039362_P002	Maize	cytosol	25.81	9.55
Zm00001d008930_P003	Maize	cytosol	25.81	9.48
Zm00001d018088_P001	Maize	cytosol	22.18	9.32
Zm00001d052221_P002	Maize	cytosol, nucleus, plastid	21.77	9.23
Zm00001d044479_P001	Maize	cytosol	25.0	9.1
Zm00001d011352_P001	Maize	cytosol	24.6	8.96
Zm00001d009724_P009	Maize	cytosol	27.02	6.27
Zm00001d017669_P001	Maize	cytosol	0.0	0.0
Zm00001d033961_P001	Maize	cytosol	0.0	0.0
Zm00001d035258_P001	Maize	cytosol	0.0	0.0
Zm00001d035261_P001	Maize	cytosol	0.0	0.0
Zm00001d006366_P001	Maize	cytosol	0.0	0.0
Zm00001d039774_P001	Maize	cytosol	0.0	0.0
Zm00001d052005_P001	Maize	cytosol	0.0	0.0
Zm00001d002746_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100381665	MapMan:35.2	EMBL:BT061922	UniProt:C0HHW6	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	ProteinID:ONM10224.1
PFAM:PF00515	PFAM:PF07719	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904	PANTHER:PTHR22904:SF356
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_2
InterPro:TPR_repeat	UniParc:UPI00019486B6	EnsemblPlantsGene:Zm00001d034423	EnsemblPlants:Zm00001d034423_P001	EnsemblPlants:Zm00001d034423_T001	SEG:seg

Description

Tetratricopeptide repeat (TPR)-like superfamily protein

Coordinates

chr1:-:292612409..292617099

Molecular Weight (calculated)

27353.0 Da

IEP (calculated)

4.510

GRAVY (calculated)

-0.630

Length

248 amino acids

Sequence
(BLAST)

001: MVLIELEPEE ATRPSLPVAE EQAVAGDAAR PSSSAAPEEE EAAAGGKASR APEEEEDAFE DALTDEQLRE KARIQANDAK AEGNKLFGAG QYEEALSQYE
101: ISLQIAAELE SAEDIRAACH SNRAVCFLKL GKHDETIKEC SKALELNPTY LKALLRRAEA HEKLEHYDEA IADMKKVVEV DPSNQQATRS LFRLEPLAAE
201: KREKMKEEMI AKLKDLGNSV LGRFGMSVDN FKAVKDPNTG SYSIQFQK

Best Arabidopsis Sequence Match ( AT4G30480.2 )
(BLAST)

001: MVLIESSESE DEILIKNEPK PASSSSPQPT ETKQVDGDDS DGFETASERE ISDEEGEEDG TKNDAVTSQE EPQHSEKKEE QIELMSEGEA IVDDGSNKEK
101: ALAEANEAKA EGNKLFVNGL YEEALSKYAF ALELVQELPE SIELRSICYL NRGVCFLKLG KCEETIKECT KALELNPTYN KALVRRAEAH EKLEHFEDAV
201: TDLKKILELD PSNDQARKGI RRLEPLAAEK REKMKEEAIT KLKEMGNSIL GRFGMSVDNF KAVKDPNTGS YSLSFQN

Arabidopsis Description

TPR1AT4G30480 protein [Source:UniProtKB/TrEMBL;Acc:Q9M0B2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.