Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g006180.2.1 | Tomato | cytosol | 86.01 | 96.55 |
| KRH09945 | Soybean | cytosol, endoplasmic reticulum | 16.04 | 81.03 |
| Bra011197.1-P | Field mustard | cytosol | 20.82 | 74.39 |
| KRH23391 | Soybean | cytosol | 41.64 | 68.16 |
| CDX68662 | Canola | endoplasmic reticulum, mitochondrion | 23.21 | 66.67 |
| CDY28190 | Canola | extracellular | 22.87 | 65.69 |
| GSMUA_Achr2P02050_001 | Banana | cytosol | 48.81 | 62.72 |
| TraesCS5A01G336700.1 | Wheat | cytosol | 47.44 | 60.7 |
| TraesCS5B01G335700.1 | Wheat | cytosol | 47.1 | 60.26 |
| TraesCS5D01G341400.1 | Wheat | cytosol | 46.76 | 59.83 |
| Os10t0486900-01 | Rice | cytosol | 48.12 | 59.75 |
| KRG99844 | Soybean | cytosol | 54.61 | 59.7 |
| CDX72245 | Canola | cytosol | 52.22 | 58.17 |
| KXG33951 | Sorghum | cytosol | 49.49 | 57.31 |
| Zm00001d034423_P001 | Maize | cytosol | 48.12 | 56.85 |
| Zm00001d012121_P002 | Maize | cytosol | 48.46 | 55.69 |
| AT4G30480.2 | Thale cress | cytosol | 52.22 | 55.23 |
| VIT_11s0037g01020.t01 | Wine grape | cytosol | 45.05 | 54.1 |
| Bra032136.1-P | Field mustard | cytosol | 50.85 | 53.79 |
| CDY65185 | Canola | cytosol | 50.85 | 53.79 |
| CDY39682 | Canola | cytosol | 50.51 | 53.43 |
| KRH46794 | Soybean | cytosol | 49.83 | 52.9 |
| PGSC0003DMT400054902 | Potato | cytosol | 16.72 | 16.39 |
| PGSC0003DMT400054803 | Potato | cytosol | 14.33 | 14.29 |
| PGSC0003DMT400022057 | Potato | plastid | 16.04 | 10.76 |
| PGSC0003DMT400045666 | Potato | cytosol | 19.11 | 10.28 |
| PGSC0003DMT400054911 | Potato | cytosol | 16.72 | 9.4 |
| PGSC0003DMT400032362 | Potato | cytosol | 22.18 | 9.29 |
| PGSC0003DMT400054909 | Potato | cytosol | 12.97 | 9.22 |
| PGSC0003DMT400091014 | Potato | nucleus | 18.77 | 9.06 |
| PGSC0003DMT400054796 | Potato | cytosol, plastid | 18.09 | 8.62 |
| PGSC0003DMT400054904 | Potato | cytosol | 17.75 | 8.61 |
| PGSC0003DMT400053133 | Potato | cytosol, plastid | 14.33 | 7.01 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:102592083 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0051879 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | UniProt:M1ASC5 | PFAM:PF00515 |
| PFAM:PF07719 | EnsemblPlantsGene:PGSC0003DMG400011219 | PGSC:PGSC0003DMG400011219 | EnsemblPlants:PGSC0003DMT400029173 | PFscan:PS50005 | PFscan:PS50293 |
| PANTHER:PTHR22904 | PANTHER:PTHR22904:SF356 | SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf |
| InterPro:TPR_1 | InterPro:TPR_2 | InterPro:TPR_repeat | UniParc:UPI000295AF44 | SEG:seg | : |
Description
Tetratricopeptide repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011219]
Coordinates
chr7:-:1528720..1534683
Molecular Weight (calculated)
32397.1 Da
IEP (calculated)
4.499
GRAVY (calculated)
-0.553
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSIEQVDSP ATGKTSTAAA AAEAAPSGYV SDGYETASDT ELNGTENGSN RESENTINTA SSSSDGDLLK EKTQEQQPEV NQEQLNEALD SDCDELRFCP
101: LPFQLSLLPI LVLQWKALAQ ANDAKVEGNA LFKDGLYEEA LSKYELALQV AADIPSSTEI RSICYANRAA CFTKLGKIEE TIKECTKALE LNPTYIKALV
201: RRAEAHEKLE HFEEAITDMT KILELEPSHD QARRTVMRLK PLADEKREKM KEEMIGKLKE MGNSILGRFG MSVDNFKTVK DPNTGSYSVQ FQK
101: LPFQLSLLPI LVLQWKALAQ ANDAKVEGNA LFKDGLYEEA LSKYELALQV AADIPSSTEI RSICYANRAA CFTKLGKIEE TIKECTKALE LNPTYIKALV
201: RRAEAHEKLE HFEEAITDMT KILELEPSHD QARRTVMRLK PLADEKREKM KEEMIGKLKE MGNSILGRFG MSVDNFKTVK DPNTGSYSVQ FQK
001: MVLIESSESE DEILIKNEPK PASSSSPQPT ETKQVDGDDS DGFETASERE ISDEEGEEDG TKNDAVTSQE EPQHSEKKEE QIELMSEGEA IVDDGSNKEK
101: ALAEANEAKA EGNKLFVNGL YEEALSKYAF ALELVQELPE SIELRSICYL NRGVCFLKLG KCEETIKECT KALELNPTYN KALVRRAEAH EKLEHFEDAV
201: TDLKKILELD PSNDQARKGI RRLEPLAAEK REKMKEEAIT KLKEMGNSIL GRFGMSVDNF KAVKDPNTGS YSLSFQN
101: ALAEANEAKA EGNKLFVNGL YEEALSKYAF ALELVQELPE SIELRSICYL NRGVCFLKLG KCEETIKECT KALELNPTYN KALVRRAEAH EKLEHFEDAV
201: TDLKKILELD PSNDQARKGI RRLEPLAAEK REKMKEEAIT KLKEMGNSIL GRFGMSVDNF KAVKDPNTGS YSLSFQN
Arabidopsis Description
TPR1AT4G30480 protein [Source:UniProtKB/TrEMBL;Acc:Q9M0B2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.