Factsheet for GSMUA_Achr2P02050_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09945	Soybean	cytosol, endoplasmic reticulum	20.61	81.03
Bra011197.1-P	Field mustard	cytosol	28.07	78.05
CDX68662	Canola	endoplasmic reticulum, mitochondrion	32.02	71.57
CDY28190	Canola	extracellular	31.58	70.59
TraesCS5A01G336700.1	Wheat	cytosol	67.54	67.25
TraesCS5B01G335700.1	Wheat	cytosol	67.11	66.81
TraesCS5D01G341400.1	Wheat	cytosol	66.67	66.38
Os10t0486900-01	Rice	cytosol	67.54	65.25
KRH23391	Soybean	cytosol	50.44	64.25
KXG33951	Sorghum	cytosol	67.54	60.87
Zm00001d012121_P002	Maize	cytosol	67.98	60.78
Zm00001d034423_P001	Maize	cytosol	64.47	59.27
KRG99844	Soybean	cytosol	65.35	55.6
Solyc07g006180.2.1	Tomato	cytosol	62.72	54.79
CDX72245	Canola	cytosol	59.65	51.71
CDY65185	Canola	cytosol	61.4	50.54
Bra032136.1-P	Field mustard	cytosol	60.96	50.18
KRH46794	Soybean	cytosol	60.53	50.0
CDY39682	Canola	cytosol	60.53	49.82
VIT_11s0037g01020.t01	Wine grape	cytosol	53.07	49.59
PGSC0003DMT400029173	Potato	cytosol	62.72	48.81
AT4G30480.2	Thale cress	cytosol	59.21	48.74
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	21.93	9.94
GSMUA_Achr7P24480_001	Banana	cytosol	23.68	8.32
GSMUA_Achr10P...	Banana	cytosol	24.12	8.25
GSMUA_Achr4P08560_001	Banana	cytosol	23.68	7.88
GSMUA_Achr11P...	Banana	plastid	20.18	7.86
GSMUA_Achr3P25160_001	Banana	cytosol	23.68	7.58
GSMUA_Achr3P24690_001	Banana	cytosol	21.05	7.07
GSMUA_AchrUn_...	Banana	cytosol	1.75	1.49

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0051879	EnsemblPlantsGene:GSMUA_Achr2G02050_001	EnsemblPlants:GSMUA_Achr2P02050_001	EnsemblPlants:GSMUA_Achr2T02050_001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	UniProt:M0S4E6	PFAM:PF07719	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR22904
PANTHER:PTHR22904:SF356	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2
InterPro:TPR_repeat	UniParc:UPI00029482BD	SEG:seg	:	:	:

Description

tetratricopeptide repeat protein 1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G02050_001]

Coordinates

chr2:-:7896589..7901967

Molecular Weight (calculated)

25647.1 Da

IEP (calculated)

4.693

GRAVY (calculated)

-0.755

Length

228 amino acids

Sequence
(BLAST)

001: MVVIEPEPDA TETGEATDAS HSRSVDAPQG GSRSDEESFE DALTEEQLRE KALKQANDAK EEGNKLFRTG QYEDALLKYE LALQIASEVT SSVDVCSMCH
101: GNRAACFLKL DRYKETVQEC TKALELNPSY IKALFRRAEA HEKLENYDEA IADMKKVLEL DPANDQARKN IRRLEPIAAE KREKMKEEMI GKLKEMGNSL
201: LGRFGMNLDN FKAVKDPNTG SYSISFQQ

Best Arabidopsis Sequence Match ( AT4G30480.2 )
(BLAST)

001: MVLIESSESE DEILIKNEPK PASSSSPQPT ETKQVDGDDS DGFETASERE ISDEEGEEDG TKNDAVTSQE EPQHSEKKEE QIELMSEGEA IVDDGSNKEK
101: ALAEANEAKA EGNKLFVNGL YEEALSKYAF ALELVQELPE SIELRSICYL NRGVCFLKLG KCEETIKECT KALELNPTYN KALVRRAEAH EKLEHFEDAV
201: TDLKKILELD PSNDQARKGI RRLEPLAAEK REKMKEEAIT KLKEMGNSIL GRFGMSVDNF KAVKDPNTGS YSLSFQN

Arabidopsis Description

TPR1AT4G30480 protein [Source:UniProtKB/TrEMBL;Acc:Q9M0B2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.