Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P08560_001 | Banana | cytosol | 64.19 | 66.72 |
| GSMUA_Achr7P24480_001 | Banana | cytosol | 59.41 | 65.18 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 44.8 | 63.42 |
| GSMUA_Achr10P... | Banana | cytosol | 57.16 | 61.02 |
| HORVU1Hr1G093390.2 | Barley | cytosol | 53.93 | 57.06 |
| VIT_18s0001g09830.t01 | Wine grape | cytosol | 21.07 | 56.82 |
| GSMUA_AchrUn_... | Banana | cytosol | 21.35 | 56.72 |
| OQU78515 | Sorghum | cytosol | 55.76 | 56.71 |
| TraesCS3B01G162100.1 | Wheat | cytosol | 53.37 | 56.55 |
| TraesCS3D01G231300.1 | Wheat | cytosol, mitochondrion | 54.63 | 56.54 |
| TraesCS3B01G251600.1 | Wheat | cytosol, mitochondrion | 54.35 | 56.25 |
| TraesCS3A01G221800.1 | Wheat | cytosol | 54.35 | 56.25 |
| Os01t0218200-00 | Rice | plastid | 53.09 | 56.25 |
| EES01073 | Sorghum | cytosol | 53.79 | 56.24 |
| KRH21985 | Soybean | cytosol | 54.63 | 56.21 |
| TraesCS3D01G144600.1 | Wheat | cytosol | 53.09 | 56.0 |
| TraesCS1D01G437100.1 | Wheat | nucleus | 54.78 | 55.87 |
| Zm00001d008930_P003 | Maize | cytosol | 52.95 | 55.85 |
| TraesCS3A01G143000.1 | Wheat | cytosol | 52.67 | 55.8 |
| TraesCS1B01G462300.1 | Wheat | cytosol | 54.35 | 55.76 |
| TraesCS1A01G427400.1 | Wheat | cytosol | 54.49 | 55.67 |
| Zm00001d044479_P001 | Maize | cytosol | 53.23 | 55.65 |
| KRH27330 | Soybean | cytosol | 54.49 | 55.59 |
| CDY25865 | Canola | cytosol | 51.26 | 55.47 |
| Bra038116.1-P | Field mustard | cytosol | 51.26 | 55.47 |
| VIT_19s0014g01470.t01 | Wine grape | cytosol | 53.93 | 55.41 |
| EES02247 | Sorghum | plastid | 53.23 | 55.41 |
| HORVU3Hr1G054240.2 | Barley | cytosol, mitochondrion | 53.37 | 55.23 |
| Zm00001d039362_P002 | Maize | cytosol | 51.83 | 55.07 |
| CDY45930 | Canola | cytosol | 50.84 | 54.93 |
| KRH26223 | Soybean | nucleus | 51.54 | 54.29 |
| KRH55099 | Soybean | nucleus | 51.54 | 54.13 |
| Zm00001d011352_P001 | Maize | cytosol | 51.69 | 54.04 |
| Bra030946.1-P | Field mustard | cytosol, plastid | 50.7 | 53.88 |
| CDY02514 | Canola | cytosol, plastid | 50.7 | 53.88 |
| Os05t0210600-01 | Rice | cytosol | 30.34 | 53.87 |
| CDY25722 | Canola | cytosol, plastid | 50.28 | 53.67 |
| VIT_12s0028g02240.t01 | Wine grape | cytosol | 53.09 | 53.24 |
| KRH22291 | Soybean | plastid | 43.54 | 53.08 |
| HORVU3Hr1G027650.2 | Barley | mitochondrion | 49.58 | 53.0 |
| Os05t0587300-01 | Rice | cytosol | 40.87 | 52.43 |
| PGSC0003DMT400054803 | Potato | cytosol | 21.63 | 52.38 |
| PGSC0003DMT400032362 | Potato | cytosol | 50.84 | 51.71 |
| Solyc07g062580.2.1 | Tomato | cytosol | 50.7 | 51.5 |
| AT1G53300.1 | Thale cress | cytosol | 50.0 | 50.93 |
| Zm00001d004494_P001 | Maize | cytosol, mitochondrion | 15.59 | 50.0 |
| CDY61202 | Canola | cytosol | 47.05 | 49.93 |
| Bra000267.1-P | Field mustard | cytosol | 47.05 | 49.85 |
| CDY42827 | Canola | cytosol | 46.63 | 49.48 |
| AT3G58620.1 | Thale cress | cytosol | 47.19 | 49.27 |
| AT2G42580.1 | Thale cress | cytosol | 47.75 | 49.2 |
| CDY49237 | Canola | cytosol | 46.07 | 49.18 |
| CDY51514 | Canola | cytosol | 46.07 | 49.03 |
| CDX71941 | Canola | cytosol | 46.35 | 48.96 |
| Bra007405.1-P | Field mustard | cytosol | 46.07 | 48.74 |
| CDY55390 | Canola | cytosol | 45.79 | 48.73 |
| Bra004709.1-P | Field mustard | cytosol | 44.24 | 47.95 |
| CDY34224 | Canola | cytosol | 4.63 | 47.83 |
| Bra023795.1-P | Field mustard | cytosol | 5.62 | 45.45 |
| KRH27037 | Soybean | nucleus | 42.56 | 44.89 |
| PGSC0003DMT400054904 | Potato | cytosol | 38.06 | 44.87 |
| PGSC0003DMT400054902 | Potato | cytosol | 18.68 | 44.48 |
| Solyc10g007240.1.1 | Tomato | cytosol | 36.8 | 44.11 |
| PGSC0003DMT400054796 | Potato | cytosol, plastid | 38.06 | 44.06 |
| PGSC0003DMT400054911 | Potato | cytosol | 32.16 | 43.95 |
| Solyc10g007230.1.1 | Tomato | cytosol | 36.52 | 43.62 |
| AT3G14950.1 | Thale cress | cytosol | 43.82 | 42.74 |
| Bra027292.1-P | Field mustard | cytosol | 43.54 | 42.23 |
| CDX97619 | Canola | cytosol | 42.98 | 42.21 |
| CDX98517 | Canola | cytosol | 42.84 | 42.13 |
| CDY32327 | Canola | cytosol | 43.12 | 42.11 |
| Solyc10g007220.1.1 | Tomato | cytosol | 29.63 | 41.78 |
| CDY20095 | Canola | nucleus | 42.7 | 41.76 |
| PGSC0003DMT400054909 | Potato | cytosol | 23.74 | 41.02 |
| Bra021583.1-P | Field mustard | nucleus | 43.12 | 40.61 |
| Solyc10g007250.1.1 | Tomato | cytosol | 15.45 | 39.43 |
| CDY40820 | Canola | mitochondrion | 15.45 | 39.15 |
| Solyc10g007420.2.1 | Tomato | cytosol | 23.17 | 38.82 |
| Solyc10g007430.1.1 | Tomato | cytosol, plastid | 20.22 | 38.1 |
| CDY34222 | Canola | cytosol | 16.43 | 37.99 |
| PGSC0003DMT400091014 | Potato | nucleus | 31.46 | 36.9 |
| GSMUA_Achr3P24690_001 | Banana | cytosol | 33.57 | 35.2 |
| Zm00001d009724_P009 | Maize | cytosol | 52.11 | 34.71 |
| Bra023793.1-P | Field mustard | cytosol | 19.94 | 34.47 |
| GSMUA_Achr11P... | Banana | plastid | 28.09 | 34.19 |
| CDY34223 | Canola | cytosol | 15.03 | 32.82 |
| Bra023794.1-P | Field mustard | cytosol, nucleus, plastid | 14.75 | 32.21 |
| GSMUA_Achr2P02050_001 | Banana | cytosol | 7.58 | 23.68 |
| Zm00001d006366_P001 | Maize | cytosol | 0.42 | 1.29 |
| Zm00001d033961_P001 | Maize | cytosol | 0.42 | 1.29 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:11.3.2.5 | Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0019725 | GO:GO:0045454 |
| EnsemblPlantsGene:GSMUA_Achr3G25160_001 | EnsemblPlants:GSMUA_Achr3P25160_001 | EnsemblPlants:GSMUA_Achr3T25160_001 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR013766 |
| InterPro:IPR019734 | UniProt:M0SHN2 | PFAM:PF00085 | PFAM:PF00515 | PFAM:PF13432 | PFscan:PS50005 |
| PFscan:PS50293 | PANTHER:PTHR22904 | PANTHER:PTHR22904:SF402 | SMART:SM00028 | SUPFAM:SSF48452 | SUPFAM:SSF52833 |
| InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 | InterPro:TPR_repeat | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_domain |
| UniParc:UPI00029579CF | SEG:seg | : | : | : | : |
Description
TPR repeat-containing thioredoxin TTL1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G25160_001]
Coordinates
chr3:-:25443739..25447995
Molecular Weight (calculated)
77434.6 Da
IEP (calculated)
8.762
GRAVY (calculated)
-0.207
Length
712 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRPGEPSGR AGRRTELDPV VYRFGSALAL REGPGKDKVD DNGGPLGSPV SPLRPRVSAA ANTSSSSSSS GSAPGKPPAP ASCDTSPTAA ADRSRGSKPG
101: HRRSSSGPLI FSDRNGGSGG GSSSASSPLT NVLPAGNICP SGKITGMVPR TTARSDVLGS GTGNYGHGSI LVTKAGNEQY KRGNYVEALR FYDKAVAMFP
201: GNAACRSNRA AALMGLGRLG EAVRECEEAA RLDPANGRVH HRLACLYLRW KFCLSFYYWL AVWHCLSSVF SLFCSILPFG CYRLVDSSLP ALLSCAPNLS
301: WATSSSCCRL GQIENARLHI FSTGNQPDPV ELQKLQTVER HLGKCGEARK IGDWKSALRE ADAAIVAGAD SSPLLIAMKS EALLRLHQID EADSALTSSP
401: KFEMLCAPYL NTKFFGMHPE AYVYIVRAQV DVALGRFENA VEVAEKAKWM DSRSIEVAMI LNNVKSVVKA RIQGNELFKS GHFAEAITAY GEGLKYDPSN
501: PVLLCNRAAC RSKLGQWEKS LEDCNQALRI QPSYIKALLR RADSNAKLER WAESVQDYEV LSKELPHDPE VAEALFHAQV ALKMSRGEEI SNMKFGGEVE
601: EVTSLEQFQA AICLPRASVI CFMAVSNQKC SQITPFVNSL CIRYPSANFL KVDVDKSPTV AKAENVRVLP TFKIYKSGTR MKEMICPSQQ VLEYSVRHYI
701: WVYQFIVTIT NV
101: HRRSSSGPLI FSDRNGGSGG GSSSASSPLT NVLPAGNICP SGKITGMVPR TTARSDVLGS GTGNYGHGSI LVTKAGNEQY KRGNYVEALR FYDKAVAMFP
201: GNAACRSNRA AALMGLGRLG EAVRECEEAA RLDPANGRVH HRLACLYLRW KFCLSFYYWL AVWHCLSSVF SLFCSILPFG CYRLVDSSLP ALLSCAPNLS
301: WATSSSCCRL GQIENARLHI FSTGNQPDPV ELQKLQTVER HLGKCGEARK IGDWKSALRE ADAAIVAGAD SSPLLIAMKS EALLRLHQID EADSALTSSP
401: KFEMLCAPYL NTKFFGMHPE AYVYIVRAQV DVALGRFENA VEVAEKAKWM DSRSIEVAMI LNNVKSVVKA RIQGNELFKS GHFAEAITAY GEGLKYDPSN
501: PVLLCNRAAC RSKLGQWEKS LEDCNQALRI QPSYIKALLR RADSNAKLER WAESVQDYEV LSKELPHDPE VAEALFHAQV ALKMSRGEEI SNMKFGGEVE
601: EVTSLEQFQA AICLPRASVI CFMAVSNQKC SQITPFVNSL CIRYPSANFL KVDVDKSPTV AKAENVRVLP TFKIYKSGTR MKEMICPSQQ VLEYSVRHYI
701: WVYQFIVTIT NV
001: MSHYRRHSLE PSITSKFRDS LSFQRDDDVI NKPDFRELDF GSPLRPRGSS SAAATPAASG SSSSSSGSAS GKPAVTSQFA RRSHSGELSG LSQTSPVKPG
101: SVNRNLKPGH RRSASAGTPL IYSGLGFSPV NNNNNSSRGG GSGATSPNPG VLPTGNICPS GRILKTGMAT RASVRPETLC TGTANYGHGN IIRTGGKVSH
201: ATKAAAEMSD SEEVKKAGNV MYRKGNYAEA LALYDRAISL SPENPAYRSN RAAALAASGR LEEAVKECLE AVRCDPSYAR AHQRLASLYL RLGEAENARR
301: HLCVSGQCPD QADLQRLQTL EKHLRLCTEA RKIGDWRTVI SEIDAAIANG ADSSPQLVAC KAEAFLRLHQ IKDSDLCISS IPRLDHHHTQ PPEKLFGIVC
401: DAYVLCVQAQ VDMALGRFEN AIVKVERAMT IDHSNSPEVV SVLNNVKNVA KARTRGNELF SSGRYSEASV AYGDGLKLDA FNSVLYCNRA ACWFKLGMWE
501: KSVDDCNQAL RIQPSYTKAL LRRAASYGKL GRWEDAVRDY EVLRKELPGD SEVAESLQRA RNALSNKSEE PKYLGFNNEV EEVSTLDKFK TATSLPGISV
601: FHFKSSSNRQ SEAISPFVNT LCLRYPLVHF FKVDVEESLA LAKAESIKKI PTFKIYKKGE KVKEMVCPSH QLLEDSVTHF LL
101: SVNRNLKPGH RRSASAGTPL IYSGLGFSPV NNNNNSSRGG GSGATSPNPG VLPTGNICPS GRILKTGMAT RASVRPETLC TGTANYGHGN IIRTGGKVSH
201: ATKAAAEMSD SEEVKKAGNV MYRKGNYAEA LALYDRAISL SPENPAYRSN RAAALAASGR LEEAVKECLE AVRCDPSYAR AHQRLASLYL RLGEAENARR
301: HLCVSGQCPD QADLQRLQTL EKHLRLCTEA RKIGDWRTVI SEIDAAIANG ADSSPQLVAC KAEAFLRLHQ IKDSDLCISS IPRLDHHHTQ PPEKLFGIVC
401: DAYVLCVQAQ VDMALGRFEN AIVKVERAMT IDHSNSPEVV SVLNNVKNVA KARTRGNELF SSGRYSEASV AYGDGLKLDA FNSVLYCNRA ACWFKLGMWE
501: KSVDDCNQAL RIQPSYTKAL LRRAASYGKL GRWEDAVRDY EVLRKELPGD SEVAESLQRA RNALSNKSEE PKYLGFNNEV EEVSTLDKFK TATSLPGISV
601: FHFKSSSNRQ SEAISPFVNT LCLRYPLVHF FKVDVEESLA LAKAESIKKI PTFKIYKKGE KVKEMVCPSH QLLEDSVTHF LL
Arabidopsis Description
TTL4TTL4 [Source:UniProtKB/TrEMBL;Acc:A0A178VKQ3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.