Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 5
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G45210.1 | GSMUA_Achr10P... | AT3G27960.1 | 21798944 |
| AT3G45210.1 | GSMUA_Achr2P09630_001 | AT3G27960.1 | 21798944 |
| AT3G45210.1 | GSMUA_Achr11P... | AT3G48150.1 | 21798944 |
| AT5G03230.1 | GSMUA_Achr10P... | AT2G42580.1 | 19000166 |
| AT5G03230.1 | GSMUA_Achr3P25160_001 | AT2G42580.1 | 19000166 |
| AT5G03230.1 | GSMUA_Achr4P08560_001 | AT2G42580.1 | 19000166 |
| AT5G03230.1 | GSMUA_Achr7P24480_001 | AT2G42580.1 | 19000166 |
| AT5G03230.1 | GSMUA_AchrUn_... | AT2G42580.1 | 19000166 |
| AT5G03230.1 | GSMUA_AchrUn_... | AT2G42580.1 | 19000166 |
| AT5G03230.1 | GSMUA_Achr3P13400_001 | AT4G31920.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P18920_001 | Banana | cytosol, mitochondrion | 72.73 | 64.2 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 71.33 | 62.2 |
| KRH22888 | Soybean | cytosol, mitochondrion, nucleus | 47.55 | 44.16 |
| Solyc06g075170.1.1 | Tomato | nucleus | 48.25 | 42.33 |
| PGSC0003DMT400045373 | Potato | cytosol | 43.36 | 42.18 |
| PGSC0003DMT400020798 | Potato | plastid | 49.65 | 41.76 |
| KRH26408 | Soybean | cytosol | 43.36 | 41.61 |
| VIT_06s0004g02830.t01 | Wine grape | cytosol | 48.25 | 41.32 |
| Solyc11g069450.1.1 | Tomato | cytosol | 48.95 | 40.46 |
| Bra002459.1-P | Field mustard | nucleus | 44.76 | 40.0 |
| PGSC0003DMT400062500 | Potato | nucleus | 47.55 | 39.77 |
| VIT_08s0040g01860.t01 | Wine grape | cytosol | 45.45 | 39.63 |
| CDY65979 | Canola | nucleus | 44.06 | 39.62 |
| AT5G60680.1 | Thale cress | nucleus | 44.76 | 39.26 |
| AT3G45210.1 | Thale cress | nucleus | 40.56 | 39.19 |
| KRH25013 | Soybean | mitochondrion | 45.45 | 38.24 |
| Bra020237.1-P | Field mustard | nucleus | 44.06 | 37.95 |
| PGSC0003DMT400055482 | Potato | cytosol | 41.96 | 37.5 |
| HORVU1Hr1G041890.1 | Barley | mitochondrion | 46.85 | 37.43 |
| KRH29916 | Soybean | mitochondrion | 44.76 | 37.43 |
| Solyc10g086110.1.1 | Tomato | cytosol | 41.26 | 37.34 |
| Solyc09g007790.1.1 | Tomato | cytosol | 41.26 | 37.34 |
| TraesCS1D01G155400.1 | Wheat | mitochondrion | 46.85 | 37.02 |
| TraesCS1B01G174100.1 | Wheat | mitochondrion | 46.85 | 37.02 |
| TraesCS1A01G157900.1 | Wheat | mitochondrion | 46.85 | 37.02 |
| Zm00001d014007_P001 | Maize | cytosol, plastid | 46.15 | 36.87 |
| EER91475 | Sorghum | mitochondrion | 48.25 | 36.32 |
| KRG95986 | Soybean | nucleus | 38.46 | 36.18 |
| AT5G03230.1 | Thale cress | nucleus | 41.96 | 36.14 |
| GSMUA_Achr11P... | Banana | cytosol | 27.97 | 36.04 |
| GSMUA_Achr2P13950_001 | Banana | nucleus | 32.87 | 34.81 |
| GSMUA_AchrUn_... | Banana | cytosol | 16.78 | 34.78 |
| KRH67690 | Soybean | cytosol | 39.86 | 34.34 |
| Bra005738.1-P | Field mustard | cytosol | 41.96 | 33.71 |
| CDX70321 | Canola | nucleus | 41.26 | 33.52 |
| CDY10396 | Canola | nucleus | 41.26 | 33.52 |
| CDY11244 | Canola | cytosol | 41.26 | 33.15 |
| CDX80857 | Canola | cytosol | 41.26 | 32.96 |
| Bra009543.1-P | Field mustard | nucleus | 40.56 | 32.95 |
| GSMUA_Achr7P00240_001 | Banana | extracellular | 19.58 | 32.56 |
| GSMUA_Achr6P06990_001 | Banana | mitochondrion, nucleus | 38.46 | 32.54 |
| CDY62461 | Canola | nucleus | 35.66 | 32.28 |
| KRH19865 | Soybean | mitochondrion | 40.56 | 32.22 |
| CDX77180 | Canola | nucleus | 37.06 | 32.12 |
| AT2G28400.1 | Thale cress | mitochondrion | 35.66 | 31.48 |
| KRH32477 | Soybean | cytosol | 39.16 | 29.79 |
| GSMUA_AchrUn_... | Banana | nucleus | 32.87 | 25.82 |
| GSMUA_Achr4P33500_001 | Banana | nucleus | 32.87 | 25.68 |
| GSMUA_Achr6P00350_001 | Banana | cytosol, nucleus, plastid | 30.07 | 25.15 |
| GSMUA_Achr1P04050_001 | Banana | mitochondrion | 34.97 | 25.13 |
| GSMUA_Achr10P... | Banana | nucleus | 34.27 | 23.9 |
| Bra035703.1-P | Field mustard | cytosol | 33.57 | 19.51 |
| Os10t0481000-00 | Rice | mitochondrion | 34.97 | 16.72 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P00600_001 | EnsemblPlants:GSMUA_Achr11T00600_001 | EnsemblPlantsGene:GSMUA_Achr11G00600_001 | InterPro:Senescence_reg_S40 | PANTHER:PTHR33083 | PANTHER:PTHR33083:SF40 |
| PFAM:PF04520 | PFscan:PS51257 | SEG:seg | UniParc:UPI0002949310 | UniProt:M0RN91 | MapMan:35.2 |
Description
DUF584 domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G00600_001]
Coordinates
chr11:+:357739..358938
Molecular Weight (calculated)
15122.8 Da
IEP (calculated)
8.230
GRAVY (calculated)
-0.427
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRRQQQAT KLAAHRLLAP PAGVAAAGCD ADELDESDVW GCPAEPGQAE FAKPVPSSAR SRGGHPRVGD RPAAASSLPV NIPDWSKILG NCYGGSNIIP
101: PHELLCRSRA ASFSVHEGVG CTLKGRDLNR VRNAIWEKTG FQD
101: PHELLCRSRA ASFSVHEGVG CTLKGRDLNR VRNAIWEKTG FQD
001: MATGKSYYAR PSYRFLGTDQ PSYFTASDSG LEFDESDLFN PIHSDSPDFC RKISSSVRSG KKSSNRPSAA SSAAAASSLP VNVPDWSKIL RGEYRDNRRR
101: SIEDNDDDDD DNEDGGDWLP PHEFLAKTRM ASFSVHEGVG RTLKGRDLSR VRNAIFEKFG FQD
101: SIEDNDDDDD DNEDGGDWLP PHEFLAKTRM ASFSVHEGVG RTLKGRDLSR VRNAIFEKFG FQD
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FF51]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.