Factsheet for TraesCS1A01G157900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G427400.1
TraesCS1B01G462300.1
TraesCS1D01G437100.1
TraesCS3A01G143000.1
TraesCS3A01G221800.1
TraesCS3B01G162100.1
TraesCS3B01G251600.1
TraesCS3D01G144600.1
TraesCS3D01G231300.1
TraesCS6A01G146200.3
TraesCS6A01G251400.1
TraesCS6A01G274500.1
TraesCS6B01G174400.1
TraesCS6B01G273900.1
TraesCS6B01G302000.1
TraesCS6D01G135500.3
TraesCS6D01G233200.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G45210.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT3G45210.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT3G45210.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT3G45210.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT3G45210.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT3G45210.1	TraesCS6D01G233200.1	AT3G48150.1	21798944
AT5G03230.1	TraesCS1A01G427400.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS1B01G462300.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS1D01G437100.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS3A01G143000.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS3A01G221800.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS3B01G162100.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS3B01G251600.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS3D01G144600.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS3D01G231300.1	AT2G42580.1	19000166
AT5G03230.1	TraesCS6A01G146200.3	AT4G31920.1	18642946
AT5G03230.1	TraesCS6B01G174400.1	AT4G31920.1	18642946
AT5G03230.1	TraesCS6D01G135500.3	AT4G31920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G155400.1	Wheat	mitochondrion	98.89	98.89
HORVU1Hr1G041890.1	Barley	mitochondrion	96.69	97.77
TraesCS1B01G174100.1	Wheat	mitochondrion	96.69	96.69
Zm00001d014007_P001	Maize	cytosol, plastid	61.33	62.01
EER91475	Sorghum	mitochondrion	62.98	60.0
GSMUA_Achr11P...	Banana	mitochondrion	37.02	46.85
Solyc06g075170.1.1	Tomato	nucleus	38.67	42.94
KRH22888	Soybean	cytosol, mitochondrion, nucleus	36.46	42.86
GSMUA_Achr8P18920_001	Banana	cytosol, mitochondrion	38.12	42.59
KRH26408	Soybean	cytosol	34.81	42.28
VIT_06s0004g02830.t01	Wine grape	cytosol	38.67	41.92
PGSC0003DMT400062500	Potato	nucleus	38.12	40.35
PGSC0003DMT400045373	Potato	cytosol	32.04	39.46
PGSC0003DMT400020798	Potato	plastid	35.36	37.65
TraesCS5A01G127300.1	Wheat	cytosol	32.6	37.58
CDY62461	Canola	nucleus	32.6	37.34
AT2G28400.1	Thale cress	mitochondrion	33.15	37.04
Solyc11g069450.1.1	Tomato	cytosol	35.36	36.99
CDX77180	Canola	nucleus	33.7	36.97
PGSC0003DMT400055482	Potato	cytosol	32.6	36.88
Bra002459.1-P	Field mustard	nucleus	32.6	36.88
KRG95986	Soybean	nucleus	30.94	36.84
Bra020237.1-P	Field mustard	nucleus	33.7	36.75
AT5G03230.1	Thale cress	nucleus	33.7	36.75
VIT_08s0040g01860.t01	Wine grape	cytosol	33.15	36.59
AT3G45210.1	Thale cress	nucleus	29.83	36.49
CDY65979	Canola	nucleus	32.04	36.48
KRH25013	Soybean	mitochondrion	34.25	36.47
TraesCS6A01G222200.1	Wheat	cytosol	35.36	36.36
AT5G60680.1	Thale cress	nucleus	32.6	36.2
Solyc09g007790.1.1	Tomato	cytosol	31.49	36.08
KRH29916	Soybean	mitochondrion	33.7	35.67
Solyc10g086110.1.1	Tomato	cytosol	30.94	35.44
TraesCS2A01G380100.1	Wheat	mitochondrion	34.81	35.39
KRH67690	Soybean	cytosol	32.04	34.94
CDY10396	Canola	nucleus	33.7	34.66
CDX70321	Canola	nucleus	33.7	34.66
KRH19865	Soybean	mitochondrion	34.25	34.44
Bra009543.1-P	Field mustard	nucleus	33.15	34.09
CDY11244	Canola	cytosol	32.6	33.15
Bra005738.1-P	Field mustard	cytosol	32.6	33.15
KRH32477	Soybean	cytosol	34.25	32.98
CDX80857	Canola	cytosol	32.04	32.4
TraesCS2A01G222500.1	Wheat	cytosol	28.73	30.77
TraesCS5A01G539400.1	Wheat	cytosol	34.81	30.58
TraesCS2A01G391200.1	Wheat	nucleus	32.6	29.35
Os10t0481000-00	Rice	mitochondrion	47.51	28.76
TraesCS3A01G375300.1	Wheat	mitochondrion, plastid	33.15	24.39
TraesCS2A01G256200.1	Wheat	mitochondrion, nucleus	23.76	23.63
Bra035703.1-P	Field mustard	cytosol	30.94	22.76
TraesCS2A01G295700.1	Wheat	nucleus	28.73	22.03

Protein Annotations

EnsemblPlants:TraesCS1A01G157900.1	EnsemblPlantsGene:TraesCS1A01G157900	InterPro:Senescence_reg_S40	PANTHER:PTHR33083	PANTHER:PTHR33083:SF9	PFAM:PF04520
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:280603599..280604144

Molecular Weight (calculated)

18976.1 Da

IEP (calculated)

10.173

GRAVY (calculated)

-0.546

Length

181 amino acids

Sequence
(BLAST)

001: MAGRSSSRSM VSAHRLFAPA PARTLQHAAD PALELDEADI IWGGAALASS PPADAYGRAL SASTPSRASK PRAAAPRDAA GGGGGVGGPA SLPVNIPDWS
101: KILGAEYGGG SAGAGRWPSD DRGDAYLDRG DRQWVPPHEQ LMYRERAAAS FSVREGAGRT LKGRDLRRVR NAIWEKTGFQ D

Best Arabidopsis Sequence Match ( AT5G03230.1 )
(BLAST)

001: MASRKLFFVK PKYIYPEPKP EMSDENVFEF DESDIHNLGD HQLPNSFDAK RSISISRLRR KPTKTGDSGN REITKTGSLP VNIPDWSKIL KSEYRGHAIP
101: DDDSDDDDED DDDSNDGGRR MIPPHEYLAR RRGSSFTVHE GIGGTAKGRD LRRLRNAIWE KIGFQD

Arabidopsis Description

Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 [Source:UniProtKB/TrEMBL;Acc:Q9LYW2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.