Factsheet for TraesCS6D01G135500.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G157900.1
TraesCS1B01G174100.1
TraesCS1D01G155400.1
TraesCS2A01G380100.1
TraesCS2B01G397000.1
TraesCS2D01G376300.1
TraesCS3A01G214100.1
TraesCS3A01G287800.1
TraesCS3B01G244800.1
TraesCS3B01G322500.1
TraesCS3D01G216700.1
TraesCS3D01G287600.1
TraesCS6A01G222200.1
TraesCS6B01G258900.1
TraesCS6D01G212800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31920.1	TraesCS3A01G214100.1	AT1G01300.1	18642946
AT4G31920.1	TraesCS3A01G287800.1	AT1G01300.1	18642946
AT4G31920.1	TraesCS3B01G244800.1	AT1G01300.1	18642946
AT4G31920.1	TraesCS3B01G322500.1	AT1G01300.1	18642946
AT4G31920.1	TraesCS3D01G216700.1	AT1G01300.1	18642946
AT4G31920.1	TraesCS3D01G287600.1	AT1G01300.1	18642946
AT4G31920.1	TraesCS1A01G157900.1	AT5G03230.1	18642946
AT4G31920.1	TraesCS1B01G174100.1	AT5G03230.1	18642946
AT4G31920.1	TraesCS1D01G155400.1	AT5G03230.1	18642946
AT4G31920.1	TraesCS2A01G380100.1	AT5G03230.1	18642946
AT4G31920.1	TraesCS2B01G397000.1	AT5G03230.1	18642946
AT4G31920.1	TraesCS2D01G376300.1	AT5G03230.1	18642946
AT4G31920.1	TraesCS6A01G222200.1	AT5G03230.1	18642946
AT4G31920.1	TraesCS6B01G258900.1	AT5G03230.1	18642946
AT4G31920.1	TraesCS6D01G212800.1	AT5G03230.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G146200.3	Wheat	nucleus	98.29	99.06
TraesCS6B01G174400.1	Wheat	nucleus	93.33	96.78
HORVU6Hr1G028680.1	Barley	nucleus	91.94	95.18
Os02t0182100-01	Rice	nucleus	73.18	75.4
EES06387	Sorghum	nucleus	71.16	72.74
Zm00001d015521_P001	Maize	nucleus	69.92	71.47
TraesCS7D01G499700.1	Wheat	cytosol	9.61	57.94
GSMUA_Achr3P13400_001	Banana	nucleus	37.98	39.01
CDX87845	Canola	cytosol, extracellular	8.06	38.81
Solyc07g005140.2.1	Tomato	nucleus	38.76	37.59
CDX68803	Canola	nucleus	29.46	37.18
CDY70103	Canola	nucleus	33.18	37.09
CDY35371	Canola	nucleus	33.33	37.01
Bra032035.1-P	Field mustard	nucleus	33.33	37.01
AT4G31920.1	Thale cress	nucleus	31.63	36.96
CDY13465	Canola	nucleus	29.46	36.68
Bra023972.1-P	Field mustard	nucleus	29.3	36.49
CDX72337	Canola	nucleus	29.46	36.33
AT2G25180.1	Thale cress	nucleus	33.49	36.24
PGSC0003DMT400020233	Potato	nucleus	38.45	35.08
TraesCS6D01G342200.1	Wheat	nucleus	36.59	34.96
Solyc12g010330.1.1	Tomato	nucleus	37.83	34.46
TraesCS7D01G148000.1	Wheat	nucleus	31.63	33.94
TraesCS7D01G148200.1	Wheat	nucleus	33.02	32.32
TraesCS7D01G489600.1	Wheat	nucleus	25.12	32.27
PGSC0003DMT400008290	Potato	nucleus	38.6	32.21
TraesCS7D01G499600.1	Wheat	nucleus	24.19	31.45
TraesCS7D01G500600.1	Wheat	nucleus	27.29	30.82
TraesCS7D01G525900.1	Wheat	nucleus	27.29	30.4
TraesCS4D01G239900.1	Wheat	nucleus	29.3	27.63
TraesCS3D01G384500.2	Wheat	nucleus	25.74	26.65
CDY49965	Canola	mitochondrion	13.33	25.52
TraesCS3D01G355500.1	Wheat	nucleus, plastid	8.53	24.23
TraesCS3D01G531900.1	Wheat	nucleus	9.92	22.78
TraesCS1D01G257700.1	Wheat	nucleus	10.23	21.36

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily	GO:GO:0000160
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00072
PFAM:PF00249	PIRSF:PIRSF036392	PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874	PANTHER:PTHR43874:SF7
InterPro:Response_reg_B-typ_pln	InterPro:SANT/Myb	SMART:SM00448	SUPFAM:SSF46689	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver
TIGRFAMs:TIGR01557	EnsemblPlantsGene:TraesCS6D01G135500	EnsemblPlants:TraesCS6D01G135500.3	TIGR:cd00156	SEG:seg	:

Description

No Description!

Coordinates

chr6D:+:103599262..103603997

Molecular Weight (calculated)

69746.7 Da

IEP (calculated)

7.287

GRAVY (calculated)

-0.564

Length

645 amino acids

Sequence
(BLAST)

001: MTVEGRVSGG GDGGGGKDKF PVGMRVLAVD DDPTCLKVLE NLLRRCDYHV TTTGQAATAL RMLRENKDQF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI
101: MLSANGETQT VMKGITHGAC DYLLKPVRLE QLKTIWQHVI RRNTKNRGSD NDDAGQKGPN AEGENGGANR NKRQSRRDRD DNGDDGDDSD ENSNDNGDSS
201: SQKKPRVVWS VELHRKFVAA VNQLGIDKAV PKKILDLMNV ENITRENVAS HLQKYRLYLK RMSMDASRQA NLVAALGGRN PAYSNMNSMD VFRHYNNAYG
301: RYRPVPTSSH SQSNNLVARM NSPSAYGMHG LLSPQSQPLH LGHAQNNLGT SLNDLGVNNG NLIRGAHMST MGTGTSGNSF ANISNGAPLA PTNRAVQSLE
401: SNNRQHLGRI NSSSTDSFSS FASDSPHFPD LGRSSNTWQT AVPSNIQQLG QNGSMSQASL HGNGLRMEPV SSYAPPSNQI TSLGNDMQNQ VAPLASNTLP
501: MVFNQGAAPF TFGNSTNSRE ALNSNLAFSN SGINTSLPNL RIDNSVVPRQ TLDGGNTGGV PSLQDGKIDQ QAVGNQLNYN NNDLVGTSGL QRELSGGLDD
601: IVVDMFRIMI MVAFSSIRTG GWSSQSSPFT KSHAQDFPHL CGVCC

Best Arabidopsis Sequence Match ( AT2G25180.1 )
(BLAST)

001: MTVEQNLEAL DQFPVGMRVL AVDDDQTCLK ILESLLRHCQ YHVTTTNQAQ KALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI

Arabidopsis Description

ARR12Two-component response regulator ARR12 [Source:UniProtKB/Swiss-Prot;Acc:P62598]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.