Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- endoplasmic reticulum 4
- vacuole 6
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G146200.3 | |
| TraesCS6B01G174400.1 | |
| TraesCS6D01G135500.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G01300.1 | TraesCS6A01G146200.3 | AT4G31920.1 | 18642946 |
| AT1G01300.1 | TraesCS6B01G174400.1 | AT4G31920.1 | 18642946 |
| AT1G01300.1 | TraesCS6D01G135500.3 | AT4G31920.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G216700.1 | Wheat | vacuole | 97.95 | 97.75 |
| HORVU3Hr1G052320.1 | Barley | mitochondrion, plasma membrane, plastid, vacuole | 97.13 | 94.05 |
| TraesCS3B01G244800.1 | Wheat | plastid | 98.57 | 90.93 |
| Os01t0598600-01 | Rice | nucleus | 84.63 | 82.6 |
| Zm00001d044390_P001 | Maize | plasma membrane | 79.3 | 79.79 |
| EES01017 | Sorghum | mitochondrion, plastid | 82.17 | 77.41 |
| Solyc01g096040.2.1 | Tomato | nucleus, plastid | 56.97 | 57.8 |
| PGSC0003DMT400000651 | Potato | vacuole | 56.76 | 57.71 |
| KRH68920 | Soybean | nucleus | 53.89 | 57.05 |
| KRG97194 | Soybean | endoplasmic reticulum | 54.92 | 56.78 |
| KRH47900 | Soybean | nucleus | 54.92 | 56.66 |
| EES16428 | Sorghum | extracellular | 56.76 | 56.07 |
| CDX90023 | Canola | vacuole | 54.92 | 55.72 |
| Bra033271.1-P | Field mustard | vacuole | 54.92 | 55.72 |
| KXG24092 | Sorghum | vacuole | 56.15 | 55.69 |
| KRH06457 | Soybean | endoplasmic reticulum, vacuole | 54.3 | 55.67 |
| CDY15187 | Canola | vacuole | 54.71 | 55.51 |
| VIT_15s0046g00360.t01 | Wine grape | extracellular | 55.12 | 55.01 |
| OQU92922 | Sorghum | vacuole | 55.12 | 54.9 |
| OQU79707 | Sorghum | vacuole | 56.35 | 54.67 |
| CDY43952 | Canola | vacuole | 54.1 | 54.66 |
| KXG24090 | Sorghum | extracellular | 55.33 | 54.55 |
| Bra014420.1-P | Field mustard | vacuole | 53.89 | 54.45 |
| CDX89133 | Canola | vacuole | 53.89 | 54.45 |
| AT1G01300.1 | Thale cress | vacuole | 54.1 | 54.43 |
| Solyc10g009410.1.1 | Tomato | extracellular | 50.61 | 53.93 |
| AT3G61820.1 | Thale cress | extracellular, vacuole | 52.87 | 53.42 |
| CDX67868 | Canola | vacuole | 53.07 | 53.4 |
| Bra003476.1-P | Field mustard | vacuole | 52.66 | 52.99 |
| PGSC0003DMT400048585 | Potato | vacuole | 49.8 | 52.71 |
| GSMUA_Achr3P31640_001 | Banana | cytosol | 60.04 | 52.14 |
| CDY25081 | Canola | vacuole | 51.64 | 51.96 |
| TraesCS3A01G287800.1 | Wheat | cytosol | 37.3 | 50.98 |
| TraesCS3A01G053600.1 | Wheat | endoplasmic reticulum, vacuole | 48.57 | 46.84 |
| TraesCS2A01G554000.1 | Wheat | plastid | 38.52 | 41.87 |
| TraesCS2A01G593900.1 | Wheat | extracellular, vacuole | 39.75 | 41.1 |
| TraesCS7A01G222100.1 | Wheat | plastid | 21.11 | 37.73 |
| TraesCS5A01G125300.1 | Wheat | extracellular | 12.5 | 37.2 |
| TraesCS7A01G528000.1 | Wheat | vacuole | 35.45 | 35.23 |
| TraesCS7A01G489100.1 | Wheat | cytosol, mitochondrion | 27.25 | 35.19 |
| TraesCS7A01G219300.1 | Wheat | endoplasmic reticulum | 32.99 | 34.7 |
| TraesCS6A01G283700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 33.2 | 34.32 |
| TraesCS7A01G528200.1 | Wheat | vacuole | 35.25 | 33.46 |
| TraesCS7A01G405600.1 | Wheat | mitochondrion, plastid, vacuole | 33.61 | 33.2 |
| TraesCS7A01G185700.1 | Wheat | mitochondrion, plastid | 29.3 | 33.18 |
| TraesCS7A01G489300.1 | Wheat | endoplasmic reticulum | 31.35 | 33.12 |
| TraesCS5A01G259400.2 | Wheat | mitochondrion | 32.58 | 33.06 |
| TraesCS7A01G489200.1 | Wheat | vacuole | 31.15 | 33.04 |
| TraesCS7A01G185600.1 | Wheat | vacuole | 31.56 | 32.98 |
| TraesCS2A01G589700.1 | Wheat | vacuole | 31.15 | 32.83 |
| TraesCS7A01G489400.1 | Wheat | endoplasmic reticulum | 30.94 | 32.83 |
| TraesCS7A01G085300.1 | Wheat | vacuole | 31.35 | 32.76 |
| TraesCS6A01G283400.1 | Wheat | vacuole | 30.53 | 32.75 |
| TraesCS7A01G489000.1 | Wheat | endoplasmic reticulum, extracellular | 30.53 | 32.68 |
| TraesCS7A01G185800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 31.15 | 32.2 |
| TraesCS6A01G283500.1 | Wheat | unclear | 30.12 | 32.1 |
| TraesCS7A01G218800.1 | Wheat | plastid | 28.28 | 31.87 |
| TraesCS5A01G221900.1 | Wheat | endoplasmic reticulum, golgi | 29.92 | 31.6 |
| TraesCS4A01G439400.1 | Wheat | mitochondrion | 26.64 | 30.59 |
| TraesCS7A01G051700.1 | Wheat | vacuole | 28.69 | 29.6 |
| TraesCS7A01G174100.1 | Wheat | extracellular | 28.89 | 28.95 |
| TraesCS7A01G051300.1 | Wheat | extracellular, plasma membrane, vacuole | 28.07 | 28.9 |
| TraesCS7A01G052800.1 | Wheat | endoplasmic reticulum, vacuole | 29.1 | 28.74 |
| TraesCS7A01G052600.1 | Wheat | endoplasmic reticulum | 27.87 | 28.51 |
| TraesCS5A01G376300.1 | Wheat | extracellular, plastid, vacuole | 30.94 | 27.01 |
Protein Annotations
| MapMan:19.4.3.1 | Gene3D:2.40.70.10 | InterPro:Aspartic_peptidase_A1 | InterPro:Aspartic_peptidase_AS | InterPro:CND41-like | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004190 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 |
| GO:GO:0019538 | InterPro:IPR021109 | InterPro:IPR033121 | InterPro:PEPTIDASE_A1 | PFAM:PF14541 | PFAM:PF14543 |
| PRINTS:PR00792 | ScanProsite:PS00141 | PFscan:PS51767 | PANTHER:PTHR13683 | PANTHER:PTHR13683:SF355 | InterPro:Peptidase_aspartic_dom_sf |
| SUPFAM:SSF50630 | SignalP:SignalP-noTM | InterPro:TAXi_C | InterPro:TAXi_N | EnsemblPlantsGene:TraesCS3A01G214100 | EnsemblPlants:TraesCS3A01G214100.1 |
| TIGR:cd05472 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3A:+:388802050..388803516
Molecular Weight (calculated)
50586.1 Da
IEP (calculated)
8.884
GRAVY (calculated)
0.055
Length
488 amino acids
Sequence
(BLAST)
(BLAST)
001: MPMAPPPLLP LSALLLLLAA ASHASAKPVQ TQALLATPLS PDRVSAPSEL ARDDDSNVFA AAEDAAASTV RFRVVHRDDF SKNATAAELL AYRLERDEKR
101: AARLSAAAGA ANGTRRGGGG VVAPVVSGLA QGSGEYFTKI GVGTPATPAL MVLDTGSDVV WLQCAPCRRC YEQSGQVFDP RRSRSYGAVG CAAPLCRRLD
201: SGGCDLRRSA CLYQVTYGDG SVTAGDFATE TLTFAGGARV ARVALGCGHD NEGLFVAAAG LLGLGRGSLS FPTQISRRYG RSFSYCLVDR TSSANSASRS
301: STVTFGSGAL GSTVASSFTP MVKNPRMETF YYVQLIGISV GGARVPGVAN SDLRLDPSSG RGGVIVDSGT SVTRLARPAY SALRDAFRGA AAGLRLSPGG
401: FSLFDTCYDL SGRKVVKVPT VSMHFAGGAE AALPPENYLI PVDSKGTFCF AFAGTDGGVS IIGNIQQQGF RVVFDGDGQR VAFVPKGC
101: AARLSAAAGA ANGTRRGGGG VVAPVVSGLA QGSGEYFTKI GVGTPATPAL MVLDTGSDVV WLQCAPCRRC YEQSGQVFDP RRSRSYGAVG CAAPLCRRLD
201: SGGCDLRRSA CLYQVTYGDG SVTAGDFATE TLTFAGGARV ARVALGCGHD NEGLFVAAAG LLGLGRGSLS FPTQISRRYG RSFSYCLVDR TSSANSASRS
301: STVTFGSGAL GSTVASSFTP MVKNPRMETF YYVQLIGISV GGARVPGVAN SDLRLDPSSG RGGVIVDSGT SVTRLARPAY SALRDAFRGA AAGLRLSPGG
401: FSLFDTCYDL SGRKVVKVPT VSMHFAGGAE AALPPENYLI PVDSKGTFCF AFAGTDGGVS IIGNIQQQGF RVVFDGDGQR VAFVPKGC
001: MVGRRKALLF SLCFFFLSLP SFSSLPSFQT LFPNSHSLPC ASPVSFQPDS DSESLLESEF ESGSDSESSS SITLNLDHID ALSSNKTPDE LFSSRLQRDS
101: RRVKSIATLA AQIPGRNVTH APRPGGFSSS VVSGLSQGSG EYFTRLGVGT PARYVYMVLD TGSDIVWLQC APCRRCYSQS DPIFDPRKSK TYATIPCSSP
201: HCRRLDSAGC NTRRKTCLYQ VSYGDGSFTV GDFSTETLTF RRNRVKGVAL GCGHDNEGLF VGAAGLLGLG KGKLSFPGQT GHRFNQKFSY CLVDRSASSK
301: PSSVVFGNAA VSRIARFTPL LSNPKLDTFY YVGLLGISVG GTRVPGVTAS LFKLDQIGNG GVIIDSGTSV TRLIRPAYIA MRDAFRVGAK TLKRAPDFSL
401: FDTCFDLSNM NEVKVPTVVL HFRGADVSLP ATNYLIPVDT NGKFCFAFAG TMGGLSIIGN IQQQGFRVVY DLASSRVGFA PGGCA
101: RRVKSIATLA AQIPGRNVTH APRPGGFSSS VVSGLSQGSG EYFTRLGVGT PARYVYMVLD TGSDIVWLQC APCRRCYSQS DPIFDPRKSK TYATIPCSSP
201: HCRRLDSAGC NTRRKTCLYQ VSYGDGSFTV GDFSTETLTF RRNRVKGVAL GCGHDNEGLF VGAAGLLGLG KGKLSFPGQT GHRFNQKFSY CLVDRSASSK
301: PSSVVFGNAA VSRIARFTPL LSNPKLDTFY YVGLLGISVG GTRVPGVTAS LFKLDQIGNG GVIIDSGTSV TRLIRPAYIA MRDAFRVGAK TLKRAPDFSL
401: FDTCFDLSNM NEVKVPTVVL HFRGADVSLP ATNYLIPVDT NGKFCFAFAG TMGGLSIIGN IQQQGFRVVY DLASSRVGFA PGGCA
Arabidopsis Description
APF2Aspartyl protease family protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ3]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.