Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G146200.3 | |
| TraesCS6B01G174400.1 | |
| TraesCS6D01G135500.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G01300.1 | TraesCS6A01G146200.3 | AT4G31920.1 | 18642946 |
| AT1G01300.1 | TraesCS6B01G174400.1 | AT4G31920.1 | 18642946 |
| AT1G01300.1 | TraesCS6D01G135500.3 | AT4G31920.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G287600.1 | Wheat | vacuole | 94.96 | 75.84 |
| TraesCS3B01G322500.1 | Wheat | vacuole | 93.56 | 75.39 |
| HORVU3Hr1G068330.1 | Barley | plastid, vacuole | 92.44 | 74.83 |
| Os01t0720000-00 | Rice | vacuole | 71.15 | 56.95 |
| KXG33265 | Sorghum | vacuole | 69.47 | 54.51 |
| Zm00001d043617_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 67.79 | 53.54 |
| TraesCS3A01G214100.1 | Wheat | nucleus | 50.98 | 37.3 |
| Solyc10g009410.1.1 | Tomato | extracellular | 46.5 | 36.24 |
| CDY15187 | Canola | vacuole | 48.74 | 36.17 |
| KRH06457 | Soybean | endoplasmic reticulum, vacuole | 48.18 | 36.13 |
| PGSC0003DMT400048585 | Potato | vacuole | 46.5 | 36.01 |
| Bra033271.1-P | Field mustard | vacuole | 48.46 | 35.97 |
| CDX90023 | Canola | vacuole | 48.46 | 35.97 |
| Solyc01g096040.2.1 | Tomato | nucleus, plastid | 48.18 | 35.76 |
| KRG97194 | Soybean | endoplasmic reticulum | 47.06 | 35.59 |
| KRH68920 | Soybean | nucleus | 45.94 | 35.57 |
| KRH47900 | Soybean | nucleus | 47.06 | 35.52 |
| AT1G01300.1 | Thale cress | vacuole | 48.18 | 35.46 |
| VIT_15s0046g00360.t01 | Wine grape | extracellular | 48.18 | 35.17 |
| PGSC0003DMT400000651 | Potato | vacuole | 47.06 | 35.0 |
| TraesCS2A01G554000.1 | Wheat | plastid | 43.42 | 34.52 |
| Bra014420.1-P | Field mustard | vacuole | 45.66 | 33.75 |
| CDY43952 | Canola | vacuole | 45.66 | 33.75 |
| CDX89133 | Canola | vacuole | 45.38 | 33.54 |
| AT3G61820.1 | Thale cress | extracellular, vacuole | 45.1 | 33.33 |
| CDX67868 | Canola | vacuole | 45.1 | 33.2 |
| TraesCS2A01G593900.1 | Wheat | extracellular, vacuole | 43.7 | 33.05 |
| Bra003476.1-P | Field mustard | vacuole | 44.54 | 32.78 |
| TraesCS7A01G489100.1 | Wheat | cytosol, mitochondrion | 34.45 | 32.54 |
| CDY25081 | Canola | vacuole | 43.98 | 32.37 |
| TraesCS3A01G053600.1 | Wheat | endoplasmic reticulum, vacuole | 45.1 | 31.82 |
| TraesCS7A01G222100.1 | Wheat | plastid | 23.25 | 30.4 |
| TraesCS7A01G219300.1 | Wheat | endoplasmic reticulum | 38.94 | 29.96 |
| GSMUA_Achr3P31640_001 | Banana | cytosol | 46.78 | 29.72 |
| TraesCS5A01G125300.1 | Wheat | extracellular | 13.45 | 29.27 |
| TraesCS4A01G439400.1 | Wheat | mitochondrion | 34.73 | 29.18 |
| TraesCS7A01G218800.1 | Wheat | plastid | 34.45 | 28.41 |
| TraesCS6A01G283700.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 37.25 | 28.18 |
| TraesCS7A01G489300.1 | Wheat | endoplasmic reticulum | 36.41 | 28.14 |
| TraesCS5A01G221900.1 | Wheat | endoplasmic reticulum, golgi | 36.13 | 27.92 |
| TraesCS7A01G528000.1 | Wheat | vacuole | 38.38 | 27.9 |
| TraesCS5A01G259400.2 | Wheat | mitochondrion | 37.53 | 27.86 |
| TraesCS7A01G489400.1 | Wheat | endoplasmic reticulum | 35.85 | 27.83 |
| TraesCS7A01G489200.1 | Wheat | vacuole | 35.85 | 27.83 |
| TraesCS7A01G405600.1 | Wheat | mitochondrion, plastid, vacuole | 38.38 | 27.73 |
| TraesCS7A01G489000.1 | Wheat | endoplasmic reticulum, extracellular | 35.29 | 27.63 |
| TraesCS7A01G185700.1 | Wheat | mitochondrion, plastid | 33.33 | 27.61 |
| TraesCS7A01G528200.1 | Wheat | vacuole | 39.22 | 27.24 |
| TraesCS7A01G052600.1 | Wheat | endoplasmic reticulum | 35.57 | 26.62 |
| TraesCS6A01G283400.1 | Wheat | vacuole | 33.33 | 26.15 |
| TraesCS7A01G052800.1 | Wheat | endoplasmic reticulum, vacuole | 35.57 | 25.71 |
| TraesCS2A01G589700.1 | Wheat | vacuole | 33.33 | 25.7 |
| TraesCS7A01G185600.1 | Wheat | vacuole | 33.61 | 25.7 |
| TraesCS6A01G283500.1 | Wheat | unclear | 32.77 | 25.55 |
| TraesCS7A01G051700.1 | Wheat | vacuole | 33.61 | 25.37 |
| TraesCS7A01G185800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 33.33 | 25.21 |
| TraesCS7A01G051300.1 | Wheat | extracellular, plasma membrane, vacuole | 33.05 | 24.89 |
| TraesCS7A01G085300.1 | Wheat | vacuole | 31.65 | 24.2 |
| TraesCS5A01G376300.1 | Wheat | extracellular, plastid, vacuole | 36.69 | 23.43 |
| TraesCS7A01G174100.1 | Wheat | extracellular | 30.25 | 22.18 |
Protein Annotations
| MapMan:19.4.3.1 | Gene3D:2.40.70.10 | InterPro:Aspartic_peptidase_A1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004190 |
| GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR021109 |
| InterPro:IPR033121 | InterPro:PEPTIDASE_A1 | PFAM:PF14541 | PFAM:PF14543 | PRINTS:PR00792 | PFscan:PS51767 |
| PANTHER:PTHR13683 | PANTHER:PTHR13683:SF338 | InterPro:Peptidase_aspartic_dom_sf | SUPFAM:SSF50630 | InterPro:TAXi_C | InterPro:TAXi_N |
| EnsemblPlantsGene:TraesCS3A01G287800 | EnsemblPlants:TraesCS3A01G287800.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3A:+:516119133..516120206
Molecular Weight (calculated)
37680.4 Da
IEP (calculated)
6.634
GRAVY (calculated)
-0.053
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGLPFDSGE YFASVGVGTP STSELLVIDT GSDLIWLQCK PCRRCHRQMS PLYDPKGSST YRQIPCSSPR CFPRHGCDTS TGACGYAMVY GDGSGSRGNL
101: ATDRLVFSND TSVDSVVIGC GHDNAELFDS SAGVLGVGRG AGSLATQVAP TYGRYFAYCL GDRTSVARSS ASYLAFGRTP EPPSTAFTPL LSNPRRPNLY
201: YVNMAGFSVG GERVAGGFCS SSLWLDPATG RGGVVVDSGT SISRLPRDVY AALRDAFDAR AAAAGMRRLA RGISVFDACY ELRGASVPAV VLHFAGGADV
301: ALPPENYFIP EQGGKYHCLA LEATDDGLTV LGNVLQQGFR VVFDVEKERV GFAPNGC
101: ATDRLVFSND TSVDSVVIGC GHDNAELFDS SAGVLGVGRG AGSLATQVAP TYGRYFAYCL GDRTSVARSS ASYLAFGRTP EPPSTAFTPL LSNPRRPNLY
201: YVNMAGFSVG GERVAGGFCS SSLWLDPATG RGGVVVDSGT SISRLPRDVY AALRDAFDAR AAAAGMRRLA RGISVFDACY ELRGASVPAV VLHFAGGADV
301: ALPPENYFIP EQGGKYHCLA LEATDDGLTV LGNVLQQGFR VVFDVEKERV GFAPNGC
001: MVGRRKALLF SLCFFFLSLP SFSSLPSFQT LFPNSHSLPC ASPVSFQPDS DSESLLESEF ESGSDSESSS SITLNLDHID ALSSNKTPDE LFSSRLQRDS
101: RRVKSIATLA AQIPGRNVTH APRPGGFSSS VVSGLSQGSG EYFTRLGVGT PARYVYMVLD TGSDIVWLQC APCRRCYSQS DPIFDPRKSK TYATIPCSSP
201: HCRRLDSAGC NTRRKTCLYQ VSYGDGSFTV GDFSTETLTF RRNRVKGVAL GCGHDNEGLF VGAAGLLGLG KGKLSFPGQT GHRFNQKFSY CLVDRSASSK
301: PSSVVFGNAA VSRIARFTPL LSNPKLDTFY YVGLLGISVG GTRVPGVTAS LFKLDQIGNG GVIIDSGTSV TRLIRPAYIA MRDAFRVGAK TLKRAPDFSL
401: FDTCFDLSNM NEVKVPTVVL HFRGADVSLP ATNYLIPVDT NGKFCFAFAG TMGGLSIIGN IQQQGFRVVY DLASSRVGFA PGGCA
101: RRVKSIATLA AQIPGRNVTH APRPGGFSSS VVSGLSQGSG EYFTRLGVGT PARYVYMVLD TGSDIVWLQC APCRRCYSQS DPIFDPRKSK TYATIPCSSP
201: HCRRLDSAGC NTRRKTCLYQ VSYGDGSFTV GDFSTETLTF RRNRVKGVAL GCGHDNEGLF VGAAGLLGLG KGKLSFPGQT GHRFNQKFSY CLVDRSASSK
301: PSSVVFGNAA VSRIARFTPL LSNPKLDTFY YVGLLGISVG GTRVPGVTAS LFKLDQIGNG GVIIDSGTSV TRLIRPAYIA MRDAFRVGAK TLKRAPDFSL
401: FDTCFDLSNM NEVKVPTVVL HFRGADVSLP ATNYLIPVDT NGKFCFAFAG TMGGLSIIGN IQQQGFRVVY DLASSRVGFA PGGCA
Arabidopsis Description
APF2Aspartyl protease family protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ3]
SUBAcon: [vacuole]
SUBAcon: [vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.