Factsheet for Solyc10g009410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

nucleus: 28394025
extracellular: 28847647
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 28847647 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA. Electronic address: jabadia@eead.csic.es.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g005140.2.1
Solyc12g010330.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01300.1	Solyc07g005140.2.1	AT4G31920.1	18642946
AT1G01300.1	Solyc12g010330.1.1	AT4G31920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048585	Potato	vacuole	96.29	95.66
Solyc01g096040.2.1	Tomato	nucleus, plastid	74.45	70.89
KRG97194	Soybean	endoplasmic reticulum	66.81	64.83
KRH47900	Soybean	nucleus	66.81	64.69
KRH06457	Soybean	endoplasmic reticulum, vacuole	66.59	64.08
KRH68920	Soybean	nucleus	64.19	63.77
CDX90023	Canola	vacuole	66.38	63.2
Bra033271.1-P	Field mustard	vacuole	66.16	62.99
VIT_15s0046g00360.t01	Wine grape	extracellular	67.25	62.99
AT1G01300.1	Thale cress	vacuole	66.38	62.68
CDY15187	Canola	vacuole	65.72	62.58
AT3G61820.1	Thale cress	extracellular, vacuole	64.85	61.49
CDX89133	Canola	vacuole	63.54	60.25
Bra014420.1-P	Field mustard	vacuole	63.32	60.04
CDY43952	Canola	vacuole	62.66	59.42
CDX67868	Canola	vacuole	62.88	59.38
Bra003476.1-P	Field mustard	vacuole	62.45	58.97
CDY25081	Canola	vacuole	61.79	58.35
TraesCS3A01G214100.1	Wheat	nucleus	53.93	50.61
TraesCS3D01G216700.1	Wheat	vacuole	53.93	50.51
Os01t0598600-01	Rice	nucleus	55.02	50.4
HORVU3Hr1G052320.1	Barley	mitochondrion, plasma membrane, plastid, vacuole	54.8	49.8
Zm00001d044390_P001	Maize	plasma membrane	52.18	49.28
Os05t0590000-01	Rice	extracellular	51.31	48.86
EES01017	Sorghum	mitochondrion, plastid	53.06	46.91
TraesCS3B01G244800.1	Wheat	plastid	54.15	46.88
TraesCS3A01G287800.1	Wheat	cytosol	36.24	46.5
KXG22664	Sorghum	extracellular, plastid, vacuole	50.44	46.11
GSMUA_Achr3P31640_001	Banana	cytosol	54.8	44.66
Os01t0720000-00	Rice	vacuole	43.45	44.62
Solyc05g009680.1.1	Tomato	vacuole	46.51	44.19
Zm00001d043617_P001	Maize	endoplasmic reticulum, extracellular, vacuole	41.92	42.48
OQU92922	Sorghum	vacuole	45.41	42.45
KXG24090	Sorghum	extracellular	45.41	42.02
Solyc06g069220.1.1	Tomato	extracellular	45.2	41.82
EES16428	Sorghum	extracellular	44.76	41.5
HORVU3Hr1G068330.1	Barley	plastid, vacuole	39.96	41.5
TraesCS3D01G287600.1	Wheat	vacuole	40.39	41.39
KXG33265	Sorghum	vacuole	41.05	41.32
KXG24092	Sorghum	vacuole	44.32	41.26
Solyc04g008850.1.1	Tomato	extracellular	42.79	40.92
TraesCS3B01G322500.1	Wheat	vacuole	39.52	40.86
OQU79707	Sorghum	vacuole	43.89	39.96
Solyc03g119690.1.1	Tomato	plastid	46.29	39.7
Solyc05g016310.1.1	Tomato	vacuole	36.03	31.37
Solyc03g117690.2.1	Tomato	vacuole	31.0	29.83
Solyc07g045100.1.1	Tomato	vacuole	35.59	29.69
Solyc08g067100.2.1	Tomato	extracellular, plastid	32.31	29.54
Solyc06g068550.2.1	Tomato	extracellular	30.35	29.45

Protein Annotations

MapMan:19.4.3.1	Gene3D:2.40.70.10	MEROPS:A01.050	InterPro:Aspartic_peptidase_A1	InterPro:Aspartic_peptidase_AS	InterPro:CND41-like
GO:GO:0003674	GO:GO:0003824	GO:GO:0004190	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	InterPro:IPR021109
InterPro:IPR033121	UniProt:K4CYB7	InterPro:PEPTIDASE_A1	PFAM:PF14541	PFAM:PF14543	PRINTS:PR00792
ScanProsite:PS00141	PFscan:PS51767	PANTHER:PTHR13683	PANTHER:PTHR13683:SF308	InterPro:Peptidase_aspartic_dom_sf	SUPFAM:SSF50630
SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc10g009410.1	EnsemblPlants:Solyc10g009410.1.1	InterPro:TAXi_C	InterPro:TAXi_N	TMHMM:TMhelix
UniParc:UPI000276BDAD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:+:3472716..3474092

Molecular Weight (calculated)

49472.9 Da

IEP (calculated)

8.395

GRAVY (calculated)

-0.021

Length

458 amino acids

Sequence
(BLAST)

001: MEEKLISVLF FFTIFAAAHS LQYQTLTLNP LPQLQSLSWE PQLSSDNENT LSVQLHHVDL LSPSSFNATP HALFKLRLQR DAIRAKSLSL LSANSTGKDF
101: SSSVISGLSQ GSGEYFTRIG IGTPVKYVYL VLDTGSDIVW IQCLPCSKCY SQSDPVFDPS KSSSFSTVTC DSPLCRRLDS SGCNNRNKCL YQVSYGDGSF
201: TVGEYSTETL NFRKTSVSNI SFGCGHDNEG LFIGAAGLLG LGKGKLSFPG QAGNRFGQKF SYCLVDRIGS AKPSYIVFGE SAVTRNTIFT PLLTNPKLDT
301: FYYVELTGIS VGGTKVPAVT PELFKLDAEG NGGVIVDSGT SVTRLTRPGY IAVRDAFRLG AKDLKRAPNF SLFDTCYDLS GKKQAKVPTM VLHFAGADVA
401: LPAANYMIPV NTEGRYCFGF AGTNGGLSII GNIQQQGFRV VFDLAGSRLG FAPRGCSY

Best Arabidopsis Sequence Match ( AT1G01300.1 )
(BLAST)

001: MVGRRKALLF SLCFFFLSLP SFSSLPSFQT LFPNSHSLPC ASPVSFQPDS DSESLLESEF ESGSDSESSS SITLNLDHID ALSSNKTPDE LFSSRLQRDS
101: RRVKSIATLA AQIPGRNVTH APRPGGFSSS VVSGLSQGSG EYFTRLGVGT PARYVYMVLD TGSDIVWLQC APCRRCYSQS DPIFDPRKSK TYATIPCSSP
201: HCRRLDSAGC NTRRKTCLYQ VSYGDGSFTV GDFSTETLTF RRNRVKGVAL GCGHDNEGLF VGAAGLLGLG KGKLSFPGQT GHRFNQKFSY CLVDRSASSK
301: PSSVVFGNAA VSRIARFTPL LSNPKLDTFY YVGLLGISVG GTRVPGVTAS LFKLDQIGNG GVIIDSGTSV TRLIRPAYIA MRDAFRVGAK TLKRAPDFSL
401: FDTCFDLSNM NEVKVPTVVL HFRGADVSLP ATNYLIPVDT NGKFCFAFAG TMGGLSIIGN IQQQGFRVVY DLASSRVGFA PGGCA

Arabidopsis Description

APF2Aspartyl protease family protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ3]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.