Factsheet for Solyc01g096040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	vacuole

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g005140.2.1
Solyc12g010330.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01300.1	Solyc07g005140.2.1	AT4G31920.1	18642946
AT1G01300.1	Solyc12g010330.1.1	AT4G31920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000651	Potato	vacuole	96.26	96.46
Solyc10g009410.1.1	Tomato	extracellular	70.89	74.45
KRG97194	Soybean	endoplasmic reticulum	70.27	71.61
KRH68920	Soybean	nucleus	67.98	70.93
KRH47900	Soybean	nucleus	69.02	70.19
KRH06457	Soybean	endoplasmic reticulum, vacuole	69.44	70.17
VIT_15s0046g00360.t01	Wine grape	extracellular	70.89	69.73
CDX90023	Canola	vacuole	68.61	68.61
Bra033271.1-P	Field mustard	vacuole	68.4	68.4
CDY15187	Canola	vacuole	68.19	68.19
AT1G01300.1	Thale cress	vacuole	67.78	67.22
AT3G61820.1	Thale cress	extracellular, vacuole	64.03	63.77
CDX89133	Canola	vacuole	63.62	63.35
CDX67868	Canola	vacuole	63.83	63.3
Bra003476.1-P	Field mustard	vacuole	63.41	62.89
Bra014420.1-P	Field mustard	vacuole	62.99	62.73
CDY43952	Canola	vacuole	62.58	62.32
CDY25081	Canola	vacuole	62.37	61.86
Os01t0598600-01	Rice	nucleus	59.46	57.2
TraesCS3D01G216700.1	Wheat	vacuole	58.0	57.06
TraesCS3A01G214100.1	Wheat	nucleus	57.8	56.97
HORVU3Hr1G052320.1	Barley	mitochondrion, plasma membrane, plastid, vacuole	58.42	55.75
Zm00001d044390_P001	Maize	plasma membrane	55.72	55.26
EES01017	Sorghum	mitochondrion, plastid	57.38	53.28
Os05t0590000-01	Rice	extracellular	52.81	52.81
TraesCS3B01G244800.1	Wheat	plastid	57.8	52.55
KXG22664	Sorghum	extracellular, plastid, vacuole	53.43	51.3
TraesCS3A01G287800.1	Wheat	cytosol	35.76	48.18
Solyc05g009680.1.1	Tomato	vacuole	47.61	47.51
GSMUA_Achr3P31640_001	Banana	cytosol	55.09	47.15
OQU92922	Sorghum	vacuole	46.78	45.92
EES16428	Sorghum	extracellular	46.57	45.34
Os01t0720000-00	Rice	vacuole	41.58	44.84
KXG24092	Sorghum	vacuole	45.74	44.72
KXG24090	Sorghum	extracellular	45.74	44.44
TraesCS3D01G287600.1	Wheat	vacuole	40.54	43.62
Zm00001d043617_P001	Maize	endoplasmic reticulum, extracellular, vacuole	40.75	43.36
HORVU3Hr1G068330.1	Barley	plastid, vacuole	39.71	43.31
Solyc04g008850.1.1	Tomato	extracellular	43.04	43.22
OQU79707	Sorghum	vacuole	44.91	42.94
TraesCS3B01G322500.1	Wheat	vacuole	39.29	42.66
KXG33265	Sorghum	vacuole	39.92	42.2
Solyc06g069220.1.1	Tomato	extracellular	42.2	41.01
Solyc03g119690.1.1	Tomato	plastid	45.32	40.82
Solyc05g016310.1.1	Tomato	vacuole	35.97	32.89
Solyc07g045100.1.1	Tomato	vacuole	35.55	31.15
Solyc06g068550.2.1	Tomato	extracellular	29.94	30.51
Solyc08g067100.2.1	Tomato	extracellular, plastid	31.6	30.34
Solyc03g117690.2.1	Tomato	vacuole	29.73	30.04

Protein Annotations

MapMan:19.4.3.1	Gene3D:2.40.70.10	MEROPS:A01.A05	InterPro:Aspartic_peptidase_A1	InterPro:Aspartic_peptidase_AS	InterPro:CND41-like
GO:GO:0003674	GO:GO:0003824	GO:GO:0004190	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0009056	GO:GO:0016787	GO:GO:0019538	GO:GO:0030163	InterPro:IPR021109
InterPro:IPR033121	UniProt:K4AZZ3	InterPro:PEPTIDASE_A1	PFAM:PF14541	PFAM:PF14543	PRINTS:PR00792
ScanProsite:PS00141	PFscan:PS51767	PANTHER:PTHR13683	PANTHER:PTHR13683:SF308	InterPro:Peptidase_aspartic_dom_sf	SUPFAM:SSF50630
SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc01g096040.2	EnsemblPlants:Solyc01g096040.2.1	InterPro:TAXi_C	InterPro:TAXi_N	TMHMM:TMhelix
UniParc:UPI00027676C0	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:87127646..87129453

Molecular Weight (calculated)

51482.5 Da

IEP (calculated)

9.100

GRAVY (calculated)

0.015

Length

481 amino acids

Sequence
(BLAST)

001: MEGKTISLSF LLLSLLAISV SSTSLQYHTL LLHSLPLTQL QKSLHFDAQL LSGDGSDLDP DNALSLQLHH VDLVSPSSFN ATPHALFKLR LQRDAYRAKA
101: ISDLASANAT VGRRAGKPHP GGRDFSSSVV SGLSQGSGEY FTRIGVGTPS KYVYMVLDTG SDVVWIQCSP CKKCYTQSDP VFDPSKSSSF LGVACGSPLC
201: RRLDSGSCNR KKCLYQVSYG DGSFTVGDFS TETLTFRGTR VNNVALGCGH DNEGLFVGAA GLLGLGRGRL SFPTQAGRRF GRKFSYCLVD RSASSKPSYL
301: VFGESAVSRT AVFTPLVKNP KLDTFYYVEL TGFSVGGARV PAIRPSLFKL DAAGDGGVIV DSGTSVTRLT RPAYVALRDA FRMGAKDLKR APDFSLFDTC
401: FDLSGKTEVK VPTVVMHFRG ADVSLPASNY LIPVDSDGTF CFAFAGTMSG LSIIGNIQQQ GFRVVFDLAG NRLGFAPRGC A

Best Arabidopsis Sequence Match ( AT1G01300.1 )
(BLAST)

001: MVGRRKALLF SLCFFFLSLP SFSSLPSFQT LFPNSHSLPC ASPVSFQPDS DSESLLESEF ESGSDSESSS SITLNLDHID ALSSNKTPDE LFSSRLQRDS
101: RRVKSIATLA AQIPGRNVTH APRPGGFSSS VVSGLSQGSG EYFTRLGVGT PARYVYMVLD TGSDIVWLQC APCRRCYSQS DPIFDPRKSK TYATIPCSSP
201: HCRRLDSAGC NTRRKTCLYQ VSYGDGSFTV GDFSTETLTF RRNRVKGVAL GCGHDNEGLF VGAAGLLGLG KGKLSFPGQT GHRFNQKFSY CLVDRSASSK
301: PSSVVFGNAA VSRIARFTPL LSNPKLDTFY YVGLLGISVG GTRVPGVTAS LFKLDQIGNG GVIIDSGTSV TRLIRPAYIA MRDAFRVGAK TLKRAPDFSL
401: FDTCFDLSNM NEVKVPTVVL HFRGADVSLP ATNYLIPVDT NGKFCFAFAG TMGGLSIIGN IQQQGFRVVY DLASSRVGFA PGGCA

Arabidopsis Description

APF2Aspartyl protease family protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ3]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.