CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 4
golgi 4
plasma membrane 5
endoplasmic reticulum 5
vacuole 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06457	Soybean	endoplasmic reticulum, vacuole	90.49	89.92
KRG97194	Soybean	endoplasmic reticulum	77.38	77.54
KRH68920	Soybean	nucleus	75.05	77.01
PGSC0003DMT400000651	Potato	vacuole	70.4	69.38
Solyc01g096040.2.1	Tomato	nucleus, plastid	70.19	69.02
CDY15187	Canola	vacuole	69.34	68.19
VIT_15s0046g00360.t01	Wine grape	extracellular	70.4	68.1
Bra033271.1-P	Field mustard	vacuole	69.13	67.98
CDX90023	Canola	vacuole	68.92	67.78
AT1G01300.1	Thale cress	vacuole	69.34	67.63
Solyc10g009410.1.1	Tomato	extracellular	64.69	66.81
PGSC0003DMT400048585	Potato	vacuole	63.85	65.51
Os01t0598600-01	Rice	nucleus	58.14	55.0
TraesCS3A01G214100.1	Wheat	nucleus	56.66	54.92
TraesCS3D01G216700.1	Wheat	vacuole	56.66	54.81
HORVU3Hr1G052320.1	Barley	mitochondrion, plasma membrane, plastid, vacuole	56.87	53.37
Os05t0590000-01	Rice	extracellular	53.7	52.81
Zm00001d044390_P001	Maize	plasma membrane	54.12	52.78
KXG22664	Sorghum	extracellular, plastid, vacuole	53.7	50.7
EES01017	Sorghum	mitochondrion, plastid	55.39	50.58
TraesCS3B01G244800.1	Wheat	plastid	56.24	50.28
GSMUA_Achr3P31640_001	Banana	cytosol	57.29	48.22
TraesCS3A01G287800.1	Wheat	cytosol	35.52	47.06
KRH39233	Soybean	nucleus	48.2	46.34
KRH75429	Soybean	plasma membrane, plastid, vacuole	47.15	46.07
KRH70570	Soybean	plastid	46.72	45.66
Os01t0720000-00	Rice	vacuole	41.65	44.17
KRG90588	Soybean	extracellular, vacuole	43.97	43.97
KXG24092	Sorghum	vacuole	45.24	43.5
HORVU3Hr1G068330.1	Barley	plastid, vacuole	40.17	43.08
OQU92922	Sorghum	vacuole	44.61	43.06
KRH40917	Soybean	extracellular, vacuole	37.84	42.82
Zm00001d043617_P001	Maize	endoplasmic reticulum, extracellular, vacuole	40.8	42.7
KRH36168	Soybean	endoplasmic reticulum, extracellular, vacuole	42.49	42.32
TraesCS3D01G287600.1	Wheat	vacuole	39.96	42.28
TraesCS3B01G322500.1	Wheat	vacuole	39.53	42.21
EES16428	Sorghum	extracellular	43.97	42.11
KXG24090	Sorghum	extracellular	43.97	42.02
KXG33265	Sorghum	vacuole	39.75	41.32
OQU79707	Sorghum	vacuole	42.92	40.36
KRH46246	Soybean	cytosol	25.79	39.23
KRH46242	Soybean	vacuole	36.58	35.67
KRH11684	Soybean	vacuole	35.1	35.17
KRH46241	Soybean	nucleus, vacuole	36.15	35.04
KRG98688	Soybean	nucleus	35.94	34.69
KRH46245	Soybean	nucleus	34.67	34.02
KRH36688	Soybean	mitochondrion, vacuole	34.67	33.81
KRH73276	Soybean	cytosol	27.91	32.27
KRG98962	Soybean	vacuole	36.36	30.71
KRH46018	Soybean	vacuole	36.15	30.7
KRG98063	Soybean	vacuole	34.04	30.04
KRH09627	Soybean	vacuole	29.81	30.0
KRH47308	Soybean	extracellular	30.23	29.73
KRH73277	Soybean	extracellular	28.75	29.5
KRH44589	Soybean	extracellular, vacuole	30.02	29.46
KRH73176	Soybean	extracellular, vacuole	28.54	29.22
KRH30714	Soybean	vacuole	33.4	29.1
KRH73625	Soybean	vacuole	33.83	28.52
KRH57273	Soybean	endoplasmic reticulum, golgi	16.7	27.62
KRH14503	Soybean	vacuole	34.67	22.43

Protein Annotations

EntrezGene:100791511	MapMan:19.4.3.1	Gene3D:2.40.70.10	MEROPS:A01.A05	EMBL:ACUP02004183	InterPro:Aspartic_peptidase_A1
InterPro:CND41-like	EnsemblPlantsGene:GLYMA_07G055300	GO:GO:0003674	GO:GO:0003824	GO:GO:0004190	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0016787	GO:GO:0019538
GO:GO:0030163	UniProt:I1KHU8	InterPro:IPR021109	InterPro:IPR033121	EnsemblPlants:KRH47900	ProteinID:KRH47900
ProteinID:KRH47900.1	InterPro:PEPTIDASE_A1	PFAM:PF14541	PFAM:PF14543	PRINTS:PR00792	PFscan:PS51767
PANTHER:PTHR13683	PANTHER:PTHR13683:SF308	InterPro:Peptidase_aspartic_dom_sf	SUPFAM:SSF50630	SignalP:SignalP-noTM	InterPro:TAXi_C
InterPro:TAXi_N	UniParc:UPI0002338693	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:4882873..4884707

Molecular Weight (calculated)

50760.4 Da

IEP (calculated)

8.522

GRAVY (calculated)

-0.039

Length

473 amino acids

Sequence
(BLAST)

001: MEEKLKYPCL SSLLTLFLCI SATSTNPHNS QTQTLLLHTL PDPPTLSWPE SATVEPDPEP TTSLSLHHID ALSFNKTPSQ LFHLRLERDA ARVKTLTHLA
101: AATNKTRPAN PGSGFSSSVV SGLSQGSGEY FTRLGVGTPP KYLYMVLDTG SDVVWLQCKP CTKCYSQTDQ IFDPSKSKSF AGIPCYSPLC RRLDSPGCSL
201: KNNLCQYQVS YGDGSFTFGD FSTETLTFRR AAVPRVAIGC GHDNEGLFVG AAGLLGLGRG GLSFPTQTGT RFNNKFSYCL TDRTASAKPS SIVFGDSAVS
301: RTARFTPLVK NPKLDTFYYV ELLGISVGGA PVRGISASFF RLDSTGNGGV IIDSGTSVTR LTRPAYVSLR DAFRVGASHL KRAPEFSLFD TCYDLSGLSE
401: VKVPTVVLHF RGADVSLPAA NYLVPVDNSG SFCFAFAGTM SGLSIIGNIQ QQGFRVVFDL AGSRVGFAPR GCA

Best Arabidopsis Sequence Match ( AT1G01300.1 )
(BLAST)

001: MVGRRKALLF SLCFFFLSLP SFSSLPSFQT LFPNSHSLPC ASPVSFQPDS DSESLLESEF ESGSDSESSS SITLNLDHID ALSSNKTPDE LFSSRLQRDS
101: RRVKSIATLA AQIPGRNVTH APRPGGFSSS VVSGLSQGSG EYFTRLGVGT PARYVYMVLD TGSDIVWLQC APCRRCYSQS DPIFDPRKSK TYATIPCSSP
201: HCRRLDSAGC NTRRKTCLYQ VSYGDGSFTV GDFSTETLTF RRNRVKGVAL GCGHDNEGLF VGAAGLLGLG KGKLSFPGQT GHRFNQKFSY CLVDRSASSK
301: PSSVVFGNAA VSRIARFTPL LSNPKLDTFY YVGLLGISVG GTRVPGVTAS LFKLDQIGNG GVIIDSGTSV TRLIRPAYIA MRDAFRVGAK TLKRAPDFSL
401: FDTCFDLSNM NEVKVPTVVL HFRGADVSLP ATNYLIPVDT NGKFCFAFAG TMGGLSIIGN IQQQGFRVVY DLASSRVGFA PGGCA

Arabidopsis Description

APF2Aspartyl protease family protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ3]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.