CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97194	Soybean	endoplasmic reticulum	90.02	87.92
KRH47900	Soybean	nucleus	77.01	75.05
KRH06457	Soybean	endoplasmic reticulum, vacuole	75.7	73.32
CDX90023	Canola	vacuole	72.67	69.65
Bra033271.1-P	Field mustard	vacuole	72.45	69.44
CDY15187	Canola	vacuole	72.23	69.23
AT1G01300.1	Thale cress	vacuole	71.58	68.04
Solyc01g096040.2.1	Tomato	nucleus, plastid	70.93	67.98
PGSC0003DMT400000651	Potato	vacuole	70.72	67.92
VIT_15s0046g00360.t01	Wine grape	extracellular	71.37	67.28
Solyc10g009410.1.1	Tomato	extracellular	63.77	64.19
PGSC0003DMT400048585	Potato	vacuole	62.91	62.91
TraesCS3A01G214100.1	Wheat	nucleus	57.05	53.89
TraesCS3D01G216700.1	Wheat	vacuole	57.05	53.78
Os01t0598600-01	Rice	nucleus	57.27	52.8
HORVU3Hr1G052320.1	Barley	mitochondrion, plasma membrane, plastid, vacuole	57.48	52.58
Os05t0590000-01	Rice	extracellular	54.01	51.77
Zm00001d044390_P001	Maize	plasma membrane	54.01	51.34
KXG22664	Sorghum	extracellular, plastid, vacuole	53.58	49.3
TraesCS3B01G244800.1	Wheat	plastid	56.4	49.15
EES01017	Sorghum	mitochondrion, plastid	54.66	48.65
GSMUA_Achr3P31640_001	Banana	cytosol	58.57	48.04
TraesCS3A01G287800.1	Wheat	cytosol	35.57	45.94
KRH75429	Soybean	plasma membrane, plastid, vacuole	47.07	44.83
KRH39233	Soybean	nucleus	47.72	44.72
KRH70570	Soybean	plastid	46.85	44.63
KRG90588	Soybean	extracellular, vacuole	45.55	44.4
OQU92922	Sorghum	vacuole	45.99	43.27
Os01t0720000-00	Rice	vacuole	41.65	43.05
EES16428	Sorghum	extracellular	45.55	42.51
KRH36168	Soybean	endoplasmic reticulum, extracellular, vacuole	43.6	42.32
KRH40917	Soybean	extracellular, vacuole	38.18	42.11
Zm00001d043617_P001	Maize	endoplasmic reticulum, extracellular, vacuole	41.0	41.81
KXG24092	Sorghum	vacuole	44.47	41.67
KXG24090	Sorghum	extracellular	44.47	41.41
HORVU3Hr1G068330.1	Barley	plastid, vacuole	39.48	41.27
KXG33265	Sorghum	vacuole	40.35	40.88
TraesCS3D01G287600.1	Wheat	vacuole	39.48	40.72
OQU79707	Sorghum	vacuole	43.6	39.96
TraesCS3B01G322500.1	Wheat	vacuole	38.39	39.95
KRH46246	Soybean	cytosol	26.46	39.23
KRH46242	Soybean	vacuole	36.88	35.05
KRH46241	Soybean	nucleus, vacuole	36.66	34.63
KRH11684	Soybean	vacuole	35.14	34.32
KRG98688	Soybean	nucleus	36.23	34.08
KRH46245	Soybean	nucleus	35.14	33.61
KRH73276	Soybean	cytosol	29.28	33.01
KRH36688	Soybean	mitochondrion, vacuole	34.49	32.78
KRH09627	Soybean	vacuole	31.24	30.64
KRH73277	Soybean	extracellular	30.59	30.59
KRH47308	Soybean	extracellular	31.89	30.56
KRG98962	Soybean	vacuole	36.88	30.36
KRH46018	Soybean	vacuole	36.44	30.16
KRH44589	Soybean	extracellular, vacuole	31.45	30.08
KRG98063	Soybean	vacuole	34.27	29.48
KRH73176	Soybean	extracellular, vacuole	29.07	29.0
KRH30714	Soybean	vacuole	34.06	28.91
KRH73625	Soybean	vacuole	34.06	27.99
KRH57273	Soybean	endoplasmic reticulum, golgi	16.49	26.57
KRH14503	Soybean	vacuole	35.14	22.16

Protein Annotations

EntrezGene:100818365	MapMan:19.4.3.1	Gene3D:2.40.70.10	MEROPS:A01.A05	EMBL:ACUP02002127	InterPro:Aspartic_peptidase_A1
InterPro:CND41-like	EnsemblPlantsGene:GLYMA_03G257900	GO:GO:0003674	GO:GO:0003824	GO:GO:0004190	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0016787	GO:GO:0019538
GO:GO:0030163	UniProt:I1JS04	InterPro:IPR021109	InterPro:IPR033121	EnsemblPlants:KRH68920	ProteinID:KRH68920
ProteinID:KRH68920.1	InterPro:PEPTIDASE_A1	PFAM:PF14541	PFAM:PF14543	PFscan:PS51767	PANTHER:PTHR13683
PANTHER:PTHR13683:SF308	InterPro:Peptidase_aspartic_dom_sf	SUPFAM:SSF50630	SignalP:SignalP-noTM	InterPro:TAXi_C	InterPro:TAXi_N
UniParc:UPI00023379BA	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:45233180..45235141

Molecular Weight (calculated)

50054.8 Da

IEP (calculated)

8.588

GRAVY (calculated)

-0.002

Length

461 amino acids

Sequence
(BLAST)

001: MEEGNWVLFL TLAISLCVSG AFQIQTETLP LHTLPEPHIL SETLSEPQET LSLSLHLHLH HIDALSSNKT PEQLFHLRLQ RDAKRVEALL NQIHARRSAG
101: SSFSSSIISG LAQGSGEYFT RIGVGTPARY VYMVLDTGSD VVWLQCAPCR KCYTQTDHVF DPTKSRTYAG IPCGAPLCRR LDSPGCSNKN KVCQYQVSYG
201: DGSFTFGDFS TETLTFRRNR VTRVALGCGH DNEGLFTGAA GLLGLGRGRL SFPVQTGRRF NHKFSYCLVD RSASAKPSSV IFGDSAVSRT AHFTPLIKNP
301: KLDTFYYLEL LGISVGGAPV RGLSASLFRL DAAGNGGVII DSGTSVTRLT RPAYIALRDA FRIGASHLKR APEFSLFDTC FDLSGLTEVK VPTVVLHFRG
401: ADVSLPATNY LIPVDNSGSF CFAFAGTMSG LSIIGNIQQQ GFRISYDLTG SRVGFAPRGC V

Best Arabidopsis Sequence Match ( AT1G01300.1 )
(BLAST)

001: MVGRRKALLF SLCFFFLSLP SFSSLPSFQT LFPNSHSLPC ASPVSFQPDS DSESLLESEF ESGSDSESSS SITLNLDHID ALSSNKTPDE LFSSRLQRDS
101: RRVKSIATLA AQIPGRNVTH APRPGGFSSS VVSGLSQGSG EYFTRLGVGT PARYVYMVLD TGSDIVWLQC APCRRCYSQS DPIFDPRKSK TYATIPCSSP
201: HCRRLDSAGC NTRRKTCLYQ VSYGDGSFTV GDFSTETLTF RRNRVKGVAL GCGHDNEGLF VGAAGLLGLG KGKLSFPGQT GHRFNQKFSY CLVDRSASSK
301: PSSVVFGNAA VSRIARFTPL LSNPKLDTFY YVGLLGISVG GTRVPGVTAS LFKLDQIGNG GVIIDSGTSV TRLIRPAYIA MRDAFRVGAK TLKRAPDFSL
401: FDTCFDLSNM NEVKVPTVVL HFRGADVSLP ATNYLIPVDT NGKFCFAFAG TMGGLSIIGN IQQQGFRVVY DLASSRVGFA PGGCA

Arabidopsis Description

APF2Aspartyl protease family protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ3]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.