CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 4
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES06387

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01300.1	EES06387	AT4G31920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044390_P001	Maize	plasma membrane	83.59	89.28
Os01t0598600-01	Rice	nucleus	79.92	82.8
TraesCS3A01G214100.1	Wheat	nucleus	77.41	82.17
TraesCS3D01G216700.1	Wheat	vacuole	76.83	81.39
HORVU3Hr1G052320.1	Barley	mitochondrion, plasma membrane, plastid, vacuole	77.03	79.17
TraesCS3B01G244800.1	Wheat	plastid	78.57	76.94
KXG22664	Sorghum	extracellular, plastid, vacuole	66.41	68.66
Solyc01g096040.2.1	Tomato	nucleus, plastid	53.28	57.38
PGSC0003DMT400000651	Potato	vacuole	52.9	57.08
EES16428	Sorghum	extracellular	53.67	56.28
KXG24090	Sorghum	extracellular	53.28	55.76
KXG24092	Sorghum	vacuole	52.9	55.69
VIT_15s0046g00360.t01	Wine grape	extracellular	52.51	55.62
OQU92922	Sorghum	vacuole	52.51	55.51
CDY15187	Canola	vacuole	51.54	55.51
KRH47900	Soybean	nucleus	50.58	55.39
CDX90023	Canola	vacuole	51.35	55.3
Bra033271.1-P	Field mustard	vacuole	51.35	55.3
OQU79707	Sorghum	vacuole	53.67	55.27
KRH06457	Soybean	endoplasmic reticulum, vacuole	50.58	55.04
KRH68920	Soybean	nucleus	48.65	54.66
KRG97194	Soybean	endoplasmic reticulum	49.81	54.66
AT1G01300.1	Thale cress	vacuole	50.58	54.02
AT3G61820.1	Thale cress	extracellular, vacuole	50.19	53.83
CDY43952	Canola	vacuole	49.81	53.42
Bra014420.1-P	Field mustard	vacuole	49.81	53.42
Solyc10g009410.1.1	Tomato	extracellular	46.91	53.06
CDX89133	Canola	vacuole	49.42	53.0
CDX67868	Canola	vacuole	49.23	52.58
Bra003476.1-P	Field mustard	vacuole	48.84	52.16
GSMUA_Achr3P31640_001	Banana	cytosol	56.56	52.14
PGSC0003DMT400048585	Potato	vacuole	46.14	51.84
CDY25081	Canola	vacuole	47.88	51.13
KXG33265	Sorghum	vacuole	40.73	46.37
EES02514	Sorghum	endoplasmic reticulum, vacuole	44.21	44.99
OQU82570	Sorghum	endoplasmic reticulum, vacuole	35.52	39.48
EER96952	Sorghum	mitochondrion	32.43	34.93
OQU76291	Sorghum	vacuole	31.08	34.26
EER96951	Sorghum	endoplasmic reticulum	32.05	34.02
EES07353	Sorghum	extracellular, vacuole	31.08	33.97
EER97501	Sorghum	vacuole	33.78	33.85
EES07349	Sorghum	vacuole	29.92	33.84
EER88307	Sorghum	endoplasmic reticulum, extracellular, vacuole	30.12	33.55
EER97174	Sorghum	vacuole	33.98	33.52
KXG19878	Sorghum	vacuole	29.34	33.33
OQU76292	Sorghum	plasma membrane, plastid, vacuole	31.08	33.06
EER88303	Sorghum	vacuole	29.92	33.05
EER89658	Sorghum	vacuole	29.54	32.97
OQU76307	Sorghum	endoplasmic reticulum, extracellular, vacuole	29.54	32.62
EER88640	Sorghum	extracellular, plasma membrane, vacuole	31.47	32.41
EES07336	Sorghum	vacuole	29.15	32.4
EES03312	Sorghum	extracellular	28.96	32.05
EES07335	Sorghum	vacuole	28.38	31.96
EES06163	Sorghum	vacuole	29.73	31.24
EES05617	Sorghum	endoplasmic reticulum, vacuole	27.99	31.12
EER96754	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	28.76	29.1
EES14825	Sorghum	plastid	28.38	27.07
EER89096	Sorghum	plasma membrane, vacuole	25.29	26.95
OQU84087	Sorghum	endoplasmic reticulum, vacuole	25.68	26.13
KXG19867	Sorghum	golgi	27.61	25.44
EER89099	Sorghum	plastid	23.75	23.56

Protein Annotations

MapMan:19.4.3.1	Gene3D:2.40.70.10	InterPro:Aspartic_peptidase_A1	InterPro:Aspartic_peptidase_AS	UniProt:C5XQ74	InterPro:CND41-like
EnsemblPlants:EES01017	ProteinID:EES01017	ProteinID:EES01017.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004190
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0009056	GO:GO:0016787
GO:GO:0019538	GO:GO:0030163	InterPro:IPR021109	InterPro:IPR033121	InterPro:PEPTIDASE_A1	PFAM:PF14541
PFAM:PF14543	PRINTS:PR00792	ScanProsite:PS00141	PFscan:PS51767	PANTHER:PTHR13683	PANTHER:PTHR13683:SF355
InterPro:Peptidase_aspartic_dom_sf	EnsemblPlantsGene:SORBI_3003G208800	SUPFAM:SSF50630	unigene:Sbi.15225	InterPro:TAXi_C	InterPro:TAXi_N
TMHMM:TMhelix	UniParc:UPI00081ABB52	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:54089134..54091953

Molecular Weight (calculated)

53529.3 Da

IEP (calculated)

9.492

GRAVY (calculated)

0.019

Length

518 amino acids

Sequence
(BLAST)

001: MPPTRSASTL HWTSSKRPDH RRLLAMATLA ALLLLVAASN AAALSAKAVE YHSFVATPLS PHAYTAAPSA DADEDLFGGS LAVADEGAAA ASAVHFRVVH
101: RDAFAANATA AELLRHRLQR DKRRAARISK AAAGGGAGAA NGTRSRGGAV AAPVVSGLAQ GSGEYFTKIG VGTPSTPALM VLDTGSDVVW LQCAPCRRCY
201: DQSGPVFDPR RSSSYGAVDC AAPLCRRLDS GGCDLRRRAC LYQVAYGDGS VTAGDFATET LTFAGGARVA RVALGCGHDN EGLFVAAAGL LGLGRGSLSF
301: PTQISRRYGK SFSYCLVDRT SSSSSGAASR SRSSTVTFGP PSASAASFTP MVRNPRMETF YYVQLVGISV GGARVPGVAE SDLRLDPSTG RGGVIVDSGT
401: SVTRLARPSY SALRDAFRAA AAGLRLSPGG FSLFDTCYDL GGRKVVKVPT VSMHFAGGAE AALPPENYLI PVDSRGTFCF AFAGTDGGVS IIGNIQQQGF
501: RVVFDGDGQR VGFAPKGC

Best Arabidopsis Sequence Match ( AT1G01300.1 )
(BLAST)

001: MVGRRKALLF SLCFFFLSLP SFSSLPSFQT LFPNSHSLPC ASPVSFQPDS DSESLLESEF ESGSDSESSS SITLNLDHID ALSSNKTPDE LFSSRLQRDS
101: RRVKSIATLA AQIPGRNVTH APRPGGFSSS VVSGLSQGSG EYFTRLGVGT PARYVYMVLD TGSDIVWLQC APCRRCYSQS DPIFDPRKSK TYATIPCSSP
201: HCRRLDSAGC NTRRKTCLYQ VSYGDGSFTV GDFSTETLTF RRNRVKGVAL GCGHDNEGLF VGAAGLLGLG KGKLSFPGQT GHRFNQKFSY CLVDRSASSK
301: PSSVVFGNAA VSRIARFTPL LSNPKLDTFY YVGLLGISVG GTRVPGVTAS LFKLDQIGNG GVIIDSGTSV TRLIRPAYIA MRDAFRVGAK TLKRAPDFSL
401: FDTCFDLSNM NEVKVPTVVL HFRGADVSLP ATNYLIPVDT NGKFCFAFAG TMGGLSIIGN IQQQGFRVVY DLASSRVGFA PGGCA

Arabidopsis Description

APF2Aspartyl protease family protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNJ3]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.