CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91475
EES01017
EES16428
KXG22664
KXG24090
KXG24092
KXG26730
KXG33265
OQU79707
OQU92922

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31920.1	EES01017	AT1G01300.1	18642946
AT4G31920.1	EES16428	AT1G01300.1	18642946
AT4G31920.1	KXG22664	AT1G01300.1	18642946
AT4G31920.1	KXG24090	AT1G01300.1	18642946
AT4G31920.1	KXG24092	AT1G01300.1	18642946
AT4G31920.1	KXG33265	AT1G01300.1	18642946
AT4G31920.1	OQU79707	AT1G01300.1	18642946
AT4G31920.1	OQU92922	AT1G01300.1	18642946
AT4G31920.1	EER91475	AT5G03230.1	18642946
AT4G31920.1	KXG26730	AT5G03230.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015521_P001	Maize	nucleus	93.98	93.98
Os02t0182100-01	Rice	nucleus	75.75	76.36
TraesCS6B01G174400.1	Wheat	nucleus	73.53	74.6
HORVU6Hr1G028680.1	Barley	nucleus	73.22	74.16
TraesCS6A01G146200.3	Wheat	nucleus	72.9	71.88
TraesCS6D01G135500.3	Wheat	nucleus	72.74	71.16
KXG20365	Sorghum	cytosol	7.61	44.44
CDX87845	Canola	cytosol, extracellular	8.72	41.04
GSMUA_Achr3P13400_001	Banana	nucleus	40.41	40.61
Solyc07g005140.2.1	Tomato	nucleus	41.52	39.4
CDX68803	Canola	nucleus	31.38	38.75
CDY13465	Canola	nucleus	31.54	38.42
Bra023972.1-P	Field mustard	nucleus	31.38	38.22
CDY35371	Canola	nucleus	35.18	38.21
Bra032035.1-P	Field mustard	nucleus	35.18	38.21
CDY70103	Canola	nucleus	34.87	38.13
AT2G25180.1	Thale cress	nucleus	35.82	37.92
CDX72337	Canola	nucleus	31.38	37.86
AT4G31920.1	Thale cress	nucleus	32.96	37.68
EES07684	Sorghum	nucleus	39.46	36.89
KXG19480	Sorghum	nucleus	38.67	36.31
PGSC0003DMT400020233	Potato	nucleus	39.62	35.36
Solyc12g010330.1.1	Tomato	nucleus	38.99	34.75
PGSC0003DMT400008290	Potato	nucleus	41.2	33.64
OQU78916	Sorghum	nucleus	29.0	33.21
KXG38401	Sorghum	nucleus	17.27	31.41
EES04061	Sorghum	nucleus	27.1	29.53
EES09342	Sorghum	nucleus	32.01	29.11
KXG20364	Sorghum	nucleus	28.68	27.1
KXG20361	Sorghum	nucleus	28.53	26.83
CDY49965	Canola	mitochondrion	14.26	26.71
OQU92974	Sorghum	nucleus	28.68	26.38
OQU76785	Sorghum	nucleus	21.39	24.91
KXG33682	Sorghum	mitochondrion, nucleus	9.19	21.17
EER90120	Sorghum	nucleus	16.48	19.08

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	EntrezGene:8079408	UniProt:C5XWW5
InterPro:CheY-like_superfamily	EnsemblPlants:EES06387	ProteinID:EES06387	ProteinID:EES06387.1	GO:GO:0000160	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR001789	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00072	PFAM:PF00249
PIRSF:PIRSF036392	PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874	PANTHER:PTHR43874:SF7	InterPro:Response_reg_B-typ_pln
InterPro:SANT/Myb	SMART:SM00448	EnsemblPlantsGene:SORBI_3004G066600	SUPFAM:SSF46689	SUPFAM:SSF52172	unigene:Sbi.20206
InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557	UniParc:UPI0001A85B3B	RefSeq:XP_002453411.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:5416846..5421281

Molecular Weight (calculated)

68635.9 Da

IEP (calculated)

6.569

GRAVY (calculated)

-0.533

Length

631 amino acids

Sequence
(BLAST)

001: MTVEDVKLQA AKANGGGHGA KDQFPVGMRV LAVDDDPTCL KLLEKLLQHC QYHVTTTGQA ATALKLLREK KDQFDLVISD VHMPDMDGFK LLELVGLEMD
101: LPVIMLSANG ETQTVMKGIT HGACDYLLKP VRIEQLRTIW QHVVRRRSCD AKNNGNDNDD SGKKLQVVSA EGDNGGGNRN KRTSRRGRDD NGDDGDDSDE
201: NSNENGDSST QKKPRVVWSV ELHRKFVAAV NQLGIDKAVP KKILDLMNVE NITRENVASH LQKYRLYLKR LSADASRQAN LTAAFGGRNP AYVNMGLDAF
301: RQYNAYGRYR PVPTTNHSQP NNLLARMNSP AFGMHGLLPS QPLQIGHTQN NMSTSVGNVG GMNNGNLIRG AHMPLQDTSK CFPTGPSGNS FANISNSIQL
401: VTTNNLPLQS LEPSNQQHLG RLQSSADPFN SFVGESPQFP DLGRCNTTWP TAVSSSNVQE LGQKDRIVNG PKLEPLSSFT EASSQIPLLG NEMQSQVASL
501: ASNGLPMPFT QEAAPFAYGS STNSREMLNN NLALSNSGIN SSLPNLRIDG SVVPRQTLDG GNSGGVPPLQ DGRIDHQAVS SHLSYNNELM MGTSRLQRGL
601: SGGLDDIVVD MFRPDRADDG VPFIDGDWEL V

Best Arabidopsis Sequence Match ( AT2G25180.1 )
(BLAST)

001: MTVEQNLEAL DQFPVGMRVL AVDDDQTCLK ILESLLRHCQ YHVTTTNQAQ KALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI

Arabidopsis Description

ARR12Two-component response regulator ARR12 [Source:UniProtKB/Swiss-Prot;Acc:P62598]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.