CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90120	Sorghum	nucleus	85.24	84.77
OQU78916	Sorghum	nucleus	46.49	45.73
KXG20361	Sorghum	nucleus	48.71	39.34
KXG20364	Sorghum	nucleus	47.97	38.92
EES09342	Sorghum	nucleus	49.08	38.33
KRH16193	Soybean	nucleus	13.28	35.64
KRH33116	Soybean	cytosol	15.13	28.77
KXG20365	Sorghum	cytosol	5.72	28.7
KXG38401	Sorghum	nucleus	14.94	23.34
GSMUA_Achr10P...	Banana	nucleus	18.27	22.81
EES06387	Sorghum	nucleus	24.91	21.39
CDY02794	Canola	nucleus	17.71	20.13
Solyc07g005140.2.1	Tomato	nucleus	23.43	19.1
PGSC0003DMT400020233	Potato	nucleus	24.72	18.95
EES04061	Sorghum	nucleus	20.11	18.83
Solyc12g010330.1.1	Tomato	nucleus	23.99	18.36
EES07684	Sorghum	nucleus	22.69	18.22
KRH03086	Soybean	nucleus	22.14	17.62
KXG19480	Sorghum	nucleus	21.77	17.56
OQU92974	Sorghum	nucleus	21.96	17.35
AT5G58080.1	Thale cress	nucleus	20.11	17.17
KRH20086	Soybean	nucleus	21.22	16.91
KXG33682	Sorghum	mitochondrion, nucleus	8.3	16.42
PGSC0003DMT400008290	Potato	nucleus	23.25	16.3
CDY02793	Canola	nucleus	18.63	16.13
CDY32725	Canola	nucleus	18.45	16.05
Bra020390.1-P	Field mustard	nucleus	18.45	16.05

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	UniProt:A0A1W0VU47	InterPro:CheY-like_superfamily
GO:GO:0000160	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	EnsemblPlants:OQU76785
ProteinID:OQU76785	ProteinID:OQU76785.1	PFAM:PF00072	PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR31442
PANTHER:PTHR31442:SF17	SMART:SM00448	EnsemblPlantsGene:SORBI_3010G208100	SUPFAM:SSF46689	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver
TIGRFAMs:TIGR01557	UniParc:UPI0009DC8549	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:55121187..55130513

Molecular Weight (calculated)

59578.3 Da

IEP (calculated)

6.280

GRAVY (calculated)

-0.491

Length

542 amino acids

Sequence
(BLAST)

001: TIVADVSTAL DMLRERKDGD DQFDLVISDF FIPNNGINGL KFLELVAVEM DIPVIVLSAN DEMETMAKAI QHGACHYMVK PVRPEMVKNI WLHVVRKSKS
101: NIRNKVNNRN DNPSQIGQPV DDEKDDAKHT RKHCKKNRKD GDGSEKDEVI STQKKQRVEW TRQLHSKFLE AINHIGMDNA VPKKILEVMN VDGITKENVA
201: SHLQKFRMYL KKQKEGTLKY SAFVDEQQAW LNGKTHVNSN MSVPECSSTQ ISNEHPPLGT SMSFPSSCSG ISYASKLRAS ILGSNKGIPF DPDSFFEEMA
301: GVAPSSHLPL QSPELVNLPS TQIWSSSIGM LNQVAREPPQ FTSRNSNNYW TTGVSSSFHD GQNVGMSIGP SQRNNIFMNQ LPGLVASSQS VPCSRNEYHQ
401: NQMAGVMGTT PMVSFNEQAT LAPFNFGSNG SSTVMPINNF VPGSSLSTRP SLSNLKICNS LILTQMPNGG GTTGNLPEGG TVGHQTVGDQ ENNKIQLPIT
501: NELPTAGTSE AQNGAIDNID AFFADWVKQD LLNDDDAFFN GM

Best Arabidopsis Sequence Match ( AT2G25180.1 )
(BLAST)

001: MTVEQNLEAL DQFPVGMRVL AVDDDQTCLK ILESLLRHCQ YHVTTTNQAQ KALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI

Arabidopsis Description

ARR12Two-component response regulator ARR12 [Source:UniProtKB/Swiss-Prot;Acc:P62598]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.