CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20364	Sorghum	nucleus	82.27	82.63
OQU78916	Sorghum	nucleus	62.74	76.41
EES09342	Sorghum	nucleus	76.16	73.63
KXG20365	Sorghum	cytosol	11.33	70.37
Zm00001d036802_P001	Maize	nucleus	38.15	65.98
OQU76785	Sorghum	nucleus	39.34	48.71
EER90120	Sorghum	nucleus	34.28	42.2
KRH16193	Soybean	nucleus	12.52	41.58
KRH33116	Soybean	cytosol	15.5	36.49
GSMUA_Achr10P...	Banana	nucleus	19.23	29.72
EES06387	Sorghum	nucleus	26.83	28.53
CDY02794	Canola	nucleus	19.67	27.67
PGSC0003DMT400020233	Potato	nucleus	27.42	26.03
Solyc12g010330.1.1	Tomato	nucleus	27.42	25.99
EES04061	Sorghum	nucleus	21.76	25.22
Solyc07g005140.2.1	Tomato	nucleus	24.89	25.11
EES07684	Sorghum	nucleus	24.74	24.59
KXG19480	Sorghum	nucleus	24.44	24.4
KXG38401	Sorghum	nucleus	12.52	24.21
KRH03086	Soybean	nucleus	24.44	24.08
Bra020390.1-P	Field mustard	nucleus	21.61	23.27
CDY32725	Canola	nucleus	21.61	23.27
KRH20086	Soybean	nucleus	23.55	23.24
CDY02793	Canola	nucleus	21.61	23.16
AT5G58080.1	Thale cress	nucleus	21.76	22.99
PGSC0003DMT400008290	Potato	nucleus	24.74	21.47
OQU92974	Sorghum	nucleus	21.31	20.85
KXG33682	Sorghum	mitochondrion, nucleus	7.15	17.52

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	UniProt:A0A194YL88	InterPro:CheY-like_superfamily
GO:GO:0000160	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:IPR017930	EnsemblPlants:KXG20361	ProteinID:KXG20361	ProteinID:KXG20361.1
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00072	PFAM:PF00249	PFscan:PS50110	PFscan:PS51294
PANTHER:PTHR43874	PANTHER:PTHR43874:SF7	InterPro:SANT/Myb	SMART:SM00448	EnsemblPlantsGene:SORBI_3010G191900	SUPFAM:SSF46689
SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557	UniParc:UPI0007F2FB3C	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:53353487..53362462

Molecular Weight (calculated)

72443.3 Da

IEP (calculated)

7.179

GRAVY (calculated)

-0.395

Length

671 amino acids

Sequence
(BLAST)

001: MAADTFPAGL RVLAVEHDRV CSKILERQLK YCNYNATMVT NAQTALDMLR ERKEYGNQFD LVISNVAMPK PNMDGFKLLE LIGLEMDLPV IMLSANSETQ
101: TIIKGIKHGA CDYMVKPVRL EQLRGIWTHV VKNRKFPSGD GDNVEKVGAN HAKKYSRKNK KAVDVADEDN ESTSTQKKQR VQWCGELHRK FVEAVNQIGM
201: DRAVPKKILE VMNVEGLTKQ NVASHLQKYR IFLRKLREGT LKNSNPFADE TEALRRNMSL PSFIGSPSSS NHCAKMNSSS AIGTQASLHT GSVQVMSSQK
301: NLGIPQSNME PVGHCVNLPK DGVPMAVQDI SRFISSGKSY APVSSGWLPG ASQCFPSGPS GSSFANSSNG VVLNASKPFF VDISGGSFAN ISNDSPPLTS
401: NMSFSLSRSC SSYASILPGK ILGSSRGIPF EDISDGEILA PPGHLPLQSP DLVNQPSIQF QSCSAGKFNQ VASEAHQIAG PSNSSKAAVP SRFSDLGHNV
501: GTSEDPSQGN IFKINQLSRF AGSSGQISTF RNEYKRKIAG IMGNTVPMVG FREQVATSSF GNNTHSTAMP IGNSALASSS STRPDLQIDN NSAMPTQVLN
601: GDGASDNLHV GSTIQQAVSD QVNNINEFVV GTSEAQNEES DDWDDLLAYF NQQDFINNGG PFIDGDWGSS P

Best Arabidopsis Sequence Match ( AT2G25180.1 )
(BLAST)

001: MTVEQNLEAL DQFPVGMRVL AVDDDQTCLK ILESLLRHCQ YHVTTTNQAQ KALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI

Arabidopsis Description

ARR12Two-component response regulator ARR12 [Source:UniProtKB/Swiss-Prot;Acc:P62598]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.