CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU76785	Sorghum	nucleus	84.77	85.24
OQU78916	Sorghum	nucleus	39.63	39.2
KXG20361	Sorghum	nucleus	42.2	34.28
KXG20364	Sorghum	nucleus	41.47	33.83
EES09342	Sorghum	nucleus	42.39	33.29
KRH16193	Soybean	nucleus	9.54	25.74
KRH33116	Soybean	cytosol	10.46	20.0
KXG38401	Sorghum	nucleus	11.38	17.87
EES06387	Sorghum	nucleus	19.08	16.48
GSMUA_Achr10P...	Banana	nucleus	12.84	16.13
KXG33682	Sorghum	mitochondrion, nucleus	8.07	16.06
CDY02794	Canola	nucleus	13.39	15.3
Solyc07g005140.2.1	Tomato	nucleus	18.17	14.89
EES04061	Sorghum	nucleus	15.6	14.68
PGSC0003DMT400020233	Potato	nucleus	18.9	14.57
EES07684	Sorghum	nucleus	17.98	14.52
Solyc12g010330.1.1	Tomato	nucleus	18.35	14.12
KRH03086	Soybean	nucleus	17.61	14.1
OQU92974	Sorghum	nucleus	17.61	13.99
KXG19480	Sorghum	nucleus	16.7	13.54
KRH20086	Soybean	nucleus	16.88	13.53
AT5G58080.1	Thale cress	nucleus	15.6	13.39
CDY02793	Canola	nucleus	14.5	12.62
PGSC0003DMT400008290	Potato	nucleus	17.8	12.55
CDY32725	Canola	nucleus	14.31	12.52
Bra020390.1-P	Field mustard	nucleus	14.31	12.52
KXG20365	Sorghum	cytosol	0.73	3.7

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	UniProt:C5Z6S8	EnsemblPlants:EER90120	ProteinID:EER90120
ProteinID:EER90120.2	GO:GO:0000160	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006508	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0008239	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFscan:PS50110
PFscan:PS51294	PANTHER:PTHR31442	PANTHER:PTHR31442:SF17	EnsemblPlantsGene:SORBI_3010G208300	SUPFAM:SSF46689	InterPro:Sig_transdc_resp-reg_receiver
TIGRFAMs:TIGR01557	UniParc:UPI0003C6D9F3	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:55149008..55151215

Molecular Weight (calculated)

59515.1 Da

IEP (calculated)

7.071

GRAVY (calculated)

-0.593

Length

545 amino acids

Sequence
(BLAST)

001: METMAKAIQH GACHYMVKPV RPEMVKNIWL HVVRKGKSNL RNKVNTRNDK PSQIVQPVDD ENGEKDDAKY TRKHCKKNRK DGDGAEKDEV ISTQKKQRVE
101: WTRQLHSKFL EAINHIGMDK AVPKKILEVM NVDGITKENV ASHLQKFRMY LKKQKEGTLK YSAFVDEQQA WLNGKTHVNS NMSVPECSST QISNEHPPLG
201: TSMSFPSSCS GISYASKLRA SILGSNKGIP FDPDSFFEEM AGGELLQSPE LANHPLAQIQ SLSTDQVAPS SHLPLQSPEL VNQPSTQIWS SSIGMLNQVA
301: REPPQFTSRN SSNYWTTSVS SSFHDGQNVG MSIGPSQRNN IFMNQLPGLV ASSHSVPSSR NEYQNQMAGV MGTTPMVSFN EKATLAPFNF GSNGSSTVMP
401: VNNFVPGSSL STRPSLSNLK ICNSLILTQM PNGGGTTGNL PEGGTVGHQT VGDQENNKIQ LPMSTREVQI DMPVQMLNGG ASGNLPKGSN TDLHPAGDQV
501: NSTNELPTAG TSEAQNGAID NIDAFLADWV KQDLLNDDDA FFNGM

Best Arabidopsis Sequence Match ( AT3G16857.3 )
(BLAST)

001: MALSLLRKNK HGFDIVISDV HMPDMDGFKL LEHVGLEMDL PVIMMSADDS KSVVLKGVTH GAVDYLIKPV RMEALKNIWQ HVVRKRRSEW SVPEHSGSIE
101: ETGERQQQQH RGGGGGAAVS GGEDAVDDNS SSVNEGNNWR SSSRKRKDEE GEEQGDDKDE DASNLKKPRV VWSVELHQQF VAAVNQLGVE KAVPKKILEL
201: MNVPGLTREN VASHLQKYRI YLRRLGGVSQ HQGNLNNSFM TGQDASFGPL STLNGFDLQA LAVTGQLPAQ SLAQLQAAGL GRPAMVSKSG LPVSSIVDER
301: SIFSFDNTKT RFGEGLGHHG QQPQQQPQMN LLHGVPTGLQ QQLPMGNRMS IQQQIAAVRA GNSVQNNGML MPLAGQQSLP RGPPPMLTSS QSSIRQPMLS
401: NRISERSGFS GRNNIPESSR VLPTSYTNLT TQHSSSSMPY NNFQPELPVN SFPLASAPGI SVPVRKATSY QEEVNSSEAG FTTPSYDMFT TRQNDWDLRN
501: IGIAFDSHQD SESAAFSASE AYSSSSMSRH NTTVAATEHG RNHQQPPSGM VQHHQVYADG NGGSVRVKSE RVATDTATMA FHEQYSNQED LMSALLKQEG
601: IAPVDGEFDF DAYSIDNIPV

Arabidopsis Description

ARR1Two-component response regulator ARR1 [Source:UniProtKB/Swiss-Prot;Acc:Q940D0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.