Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0844900-01 | Rice | nucleus | 48.91 | 61.19 |
| TraesCS3A01G361800.1 | Wheat | nucleus, plastid | 47.08 | 57.33 |
| TraesCS3D01G355500.1 | Wheat | nucleus, plastid | 47.45 | 57.27 |
| TraesCS3B01G394200.1 | Wheat | nucleus, plastid | 46.35 | 56.44 |
| HORVU3Hr1G086000.1 | Barley | nucleus | 45.62 | 54.82 |
| Zm00001d042892_P001 | Maize | nucleus | 55.84 | 50.33 |
| KXG38401 | Sorghum | nucleus | 14.96 | 11.82 |
| EES06387 | Sorghum | nucleus | 21.17 | 9.19 |
| EES04061 | Sorghum | nucleus | 18.61 | 8.81 |
| OQU78916 | Sorghum | nucleus | 17.52 | 8.71 |
| OQU92974 | Sorghum | nucleus | 21.53 | 8.6 |
| OQU76785 | Sorghum | nucleus | 16.42 | 8.3 |
| EES07684 | Sorghum | nucleus | 20.44 | 8.3 |
| EER90120 | Sorghum | nucleus | 16.06 | 8.07 |
| KXG19480 | Sorghum | nucleus | 19.71 | 8.04 |
| EES09342 | Sorghum | nucleus | 19.34 | 7.64 |
| KXG20364 | Sorghum | nucleus | 17.88 | 7.34 |
| KXG20361 | Sorghum | nucleus | 17.52 | 7.15 |
| KXG20365 | Sorghum | cytosol | 2.19 | 5.56 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.1 | UniProt:A0A1B6Q6X8 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | EnsemblPlants:KXG33682 | ProteinID:KXG33682 | ProteinID:KXG33682.1 | InterPro:Myb_dom |
| InterPro:Myb_dom_plants | ProteinID:OQU87846.1 | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31442 | InterPro:SANT/Myb |
| EnsemblPlantsGene:SORBI_3003G353700 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0001C80AF6 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr3:+:67253508..67257441
Molecular Weight (calculated)
29673.0 Da
IEP (calculated)
5.741
GRAVY (calculated)
-0.802
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSPRGGRPH DPTARSALPS SSSTRHTDME DDDDAGAGAG ACGRVLEWEH GLPTEEELTP LSHPLVPPAL AAAFRIDVRG TGTAFPSSPA FDCPVVFAHN
101: SPTSHLSFRC EDEDEDEDDE GEGEREEEGE DATSGIGGSC GGGRAGKKAR MVWTPELHHR FVEAVAHLGD KGAVPKAIVR LMNVEGLTRE NVASHLQKYR
201: IYLKRTRSPG KPQQPPPAFP PEYGSHFRTQ QLSDTSSRSD YSAFSTSAAT ARSSNATKHS RLWDENGPDK RNTF
101: SPTSHLSFRC EDEDEDEDDE GEGEREEEGE DATSGIGGSC GGGRAGKKAR MVWTPELHHR FVEAVAHLGD KGAVPKAIVR LMNVEGLTRE NVASHLQKYR
201: IYLKRTRSPG KPQQPPPAFP PEYGSHFRTQ QLSDTSSRSD YSAFSTSAAT ARSSNATKHS RLWDENGPDK RNTF
001: MGKEVMVSDY GDDDGEDAGG GDEYRIPEWE IGLPNGDDLT PLSQYLVPSI LALAFSMIPE RSRTIHDVNR ASQITLSSLR SSTNASSVME EVVDRVESSV
101: PGSDPKKQKK SDGGEAAAVE DSTAEEGDSG PEDASGKTSK RPRLVWTPQL HKRFVDVVAH LGIKNAVPKT IMQLMNVEGL TRENVASHLQ KYRLYLKRIQ
201: GLTTEEDPYS SSDQLFSSTP VPPQSFQDGG GSNGKLGVPV PVPSMVPIPG YGNQMGMQGY YQQYSNHGNE SNQYMMQQNK FGTMVTYPSV GGGDVNDK
101: PGSDPKKQKK SDGGEAAAVE DSTAEEGDSG PEDASGKTSK RPRLVWTPQL HKRFVDVVAH LGIKNAVPKT IMQLMNVEGL TRENVASHLQ KYRLYLKRIQ
201: GLTTEEDPYS SSDQLFSSTP VPPQSFQDGG GSNGKLGVPV PVPSMVPIPG YGNQMGMQGY YQQYSNHGNE SNQYMMQQNK FGTMVTYPSV GGGDVNDK
Arabidopsis Description
BOATranscription factor BOA [Source:UniProtKB/Swiss-Prot;Acc:Q9LTH4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.