Factsheet for Zm00001d042892_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33682	Sorghum	mitochondrion, nucleus	50.33	55.84
Os01t0844900-01	Rice	nucleus	37.17	51.6
TraesCS3D01G355500.1	Wheat	nucleus, plastid	38.16	51.1
TraesCS3B01G394200.1	Wheat	nucleus, plastid	37.5	50.67
TraesCS3A01G361800.1	Wheat	nucleus, plastid	37.17	50.22
HORVU3Hr1G086000.1	Barley	nucleus	37.17	49.56
Zm00001d011785_P001	Maize	nucleus	25.99	36.07
Zm00001d041960_P001	Maize	nucleus	26.64	31.4
Zm00001d010280_P001	Maize	nucleus	24.01	24.41
Zm00001d038191_P001	Maize	nucleus	24.01	23.4
Zm00001d032784_P001	Maize	nucleus	15.13	13.65
Zm00001d036802_P001	Maize	nucleus	13.82	10.82
Zm00001d042463_P001	Maize	nucleus	17.76	8.78
Zm00001d048046_P001	Maize	nucleus	19.74	8.75
Zm00001d012128_P001	Maize	nucleus	17.11	8.62
Zm00001d015521_P001	Maize	nucleus	17.76	8.56
Zm00001d045112_P001	Maize	nucleus	18.75	8.52
Zm00001d028265_P002	Maize	nucleus	19.08	8.29
Zm00001d046755_P001	Maize	nucleus	17.43	7.9
Zm00001d036803_P001	Maize	cytosol	2.3	6.6
Zm00001d018380_P001	Maize	nucleus	11.84	5.84

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.1	UniProt:A0A1D6N7C9	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	ProteinID:ONM36494.1	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR31442	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000221F5AF
EnsemblPlantsGene:Zm00001d042892	EnsemblPlants:Zm00001d042892_P001	EnsemblPlants:Zm00001d042892_T001	SEG:seg	:	:

Description

G2-like-transcription factor 54response regulator 20

Coordinates

chr3:-:183117455..183119171

Molecular Weight (calculated)

32182.1 Da

IEP (calculated)

5.888

GRAVY (calculated)

-0.760

Length

304 amino acids

Sequence
(BLAST)

001: MKDDDDDGGA GSGARGRVLE SEHGLPTRGP AHDPTAPVPL SSSSSTQRRD RPAHDPTAPA PSSSSSSIRR RDMKDDDDGG AGSGACGRVL EWEHGLPTAE
101: ELTPVSHPLI PPALAAAFGI DVPRTAFPSS AFDSPALARK PPNTRLSLGC YGEDDDEKEE EGKSEVAAYT TGACGGGKSE DAASASGACR GGRAEKKARI
201: AWTPELHNRF VAAVEHLGDK GAVPKAIVRL MNVEGLTREN VASHLQKYRI YLKQQARSPA GPQPPPAYSP SDSRPQQPSD TSTRSTCDIE KLERDKEFWA
301: LVAN

Best Arabidopsis Sequence Match ( AT3G46640.3 )
(BLAST)

001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGSWCLQNFL
301: SFAEFSTAKS QIASVQERII QSIM

Arabidopsis Description

PCL1Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J959]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.