Factsheet for Zm00001d015521_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003009_P001
Zm00001d014007_P001
Zm00001d017287_P001
Zm00001d025872_P001
Zm00001d043617_P001
Zm00001d044390_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G31920.1	Zm00001d043617_P001	AT1G01300.1	18642946
AT4G31920.1	Zm00001d044390_P001	AT1G01300.1	18642946
AT4G31920.1	Zm00001d003009_P001	AT5G03230.1	18642946
AT4G31920.1	Zm00001d014007_P001	AT5G03230.1	18642946
AT4G31920.1	Zm00001d017287_P001	AT5G03230.1	18642946
AT4G31920.1	Zm00001d025872_P001	AT5G03230.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06387	Sorghum	nucleus	93.98	93.98
Os02t0182100-01	Rice	nucleus	75.28	75.88
TraesCS6B01G174400.1	Wheat	nucleus	72.27	73.31
HORVU6Hr1G028680.1	Barley	nucleus	71.79	72.71
TraesCS6A01G146200.3	Wheat	nucleus	71.63	70.62
TraesCS6D01G135500.3	Wheat	nucleus	71.47	69.92
Zm00001d036803_P001	Maize	cytosol	9.19	54.72
CDX87845	Canola	cytosol, extracellular	8.72	41.04
GSMUA_Achr3P13400_001	Banana	nucleus	40.57	40.76
Solyc07g005140.2.1	Tomato	nucleus	40.89	38.8
CDY13465	Canola	nucleus	31.7	38.61
Bra023972.1-P	Field mustard	nucleus	31.54	38.42
CDY35371	Canola	nucleus	35.34	38.38
Bra032035.1-P	Field mustard	nucleus	35.34	38.38
CDY70103	Canola	nucleus	35.02	38.3
CDX72337	Canola	nucleus	31.54	38.05
AT2G25180.1	Thale cress	nucleus	35.82	37.92
CDX68803	Canola	nucleus	30.59	37.77
AT4G31920.1	Thale cress	nucleus	32.96	37.68
Zm00001d045112_P001	Maize	nucleus	38.03	35.87
Zm00001d018380_P001	Maize	nucleus	34.39	35.23
PGSC0003DMT400020233	Potato	nucleus	38.99	34.79
Solyc12g010330.1.1	Tomato	nucleus	38.51	34.32
PGSC0003DMT400008290	Potato	nucleus	40.25	32.86
Zm00001d032784_P001	Maize	nucleus	17.43	32.64
Zm00001d012128_P001	Maize	nucleus	27.58	28.86
Zm00001d046755_P001	Maize	nucleus	30.27	28.46
Zm00001d011785_P001	Maize	nucleus	9.67	27.85
Zm00001d036802_P001	Maize	nucleus	16.96	27.58
Zm00001d042463_P001	Maize	nucleus	26.78	27.48
CDY49965	Canola	mitochondrion	14.26	26.71
Zm00001d048046_P001	Maize	nucleus	28.84	26.53
Zm00001d041960_P001	Maize	nucleus	10.46	25.58
Zm00001d028265_P002	Maize	nucleus	27.89	25.14
Zm00001d010280_P001	Maize	nucleus	10.62	22.41
Zm00001d038191_P001	Maize	nucleus	10.14	20.51
Zm00001d042892_P001	Maize	nucleus	8.56	17.76

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	ProteinID:AQK69081.1	InterPro:CheY-like_superfamily
UniProt:F1DK02	GO:GO:0000156	GO:GO:0000160	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009735
GO:GO:0009987	EMBL:HQ858760	InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:IPR017930	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00072	PFAM:PF00249	PIRSF:PIRSF036392	PFscan:PS50110	PFscan:PS51294
PANTHER:PTHR43874	PANTHER:PTHR43874:SF7	InterPro:Response_reg_B-typ_pln	InterPro:SANT/Myb	SMART:SM00448	SUPFAM:SSF46689
SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGRFAMs:TIGR01557	UniParc:UPI0001FF9267	EnsemblPlantsGene:Zm00001d015521	EnsemblPlants:Zm00001d015521_P001
EnsemblPlants:Zm00001d015521_T001	SEG:seg	:	:	:	:

Description

G2-like-transcription factor 24Two-component response regulator ARR12

Coordinates

chr5:-:95621404..95625832

Molecular Weight (calculated)

68642.0 Da

IEP (calculated)

6.720

GRAVY (calculated)

-0.493

Length

631 amino acids

Sequence
(BLAST)

001: MTVDELKLQA RASGGHGAKD QFPVGMRVLA VDDDPTCLKI LENLLLRCQY HVTTTGQAAT ALKLLREKKD QFDLVISDVH MPDMDGFKLL ELVGLEMDLP
101: VIMLSANGET QTVMKGITHG ACDYLLKPVR IEQLRTIWQH VVRRRSCDAK NSGNDNDDSG KKLQVVSAEG DNGGVNRNKR ISRKGRDDNG DDGDDSDDNS
201: NENGDSSSQK KPRVVWSVEL HRKFVAAVNQ LGIDKAVPKK ILDLMNVENI TRENVASHLQ KYRLYLKRLS ADASRQANLT AAFGGRNPAY VNMGLDAFRQ
301: YNAYGRYRPV PTTNHSQPNN LLARMNSPAF GMHGLLPSQP LQIGHNQNNL STSLGNVGGM NNGNLIRGAH MPLQDTSKCF PTGPSGNSFA NISNSTQLVT
401: TNNLPLQSLE PSNQQHLGRL HSSADPFNSF VGEPPQFADL GRCNTTWPTA VSSSNVQEIG QKDRIVNRPK LEPLSSFTEA SSQIPLLGSE MQSHQVASLA
501: SNGLPMPFTQ EAVPFAYGSS TNSREMLNNN LALSNSGVNS TLPNLRIDGS VVPGQTLGGS NSGGCVVPPL QDGRIDHQAV SSHLNYNNEL MGTGRLQRGL
601: SGGLDDIVVD MFRPDRADDG VSFIDGDWEL V

Best Arabidopsis Sequence Match ( AT2G25180.1 )
(BLAST)

001: MTVEQNLEAL DQFPVGMRVL AVDDDQTCLK ILESLLRHCQ YHVTTTNQAQ KALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVTH GACDYLLKPV RIEELKNIWQ HVVRSRFDKN RGSNNNGDKR DGSGNEGVGN SDQNNGKGNR KRKDQYNEDE DEDRDDNDDS CAQKKQRVVW
201: TVELHKKFVA AVNQLGYEKA MPKKILDLMN VEKLTRENVA SHLQKFRLYL KRISGVANQQ AIMANSELHF MQMNGLDGFH HRPIPVGSGQ YHGGAPAMRS
301: FPPNGILGRL NTPSGIGVRS LSSPPAGMFL QNQTDIGKFH HVSSLPLNHS DGGNILQGLP MPLEFDQLQT NNNKSRNMNS NKSIAGTSMA FPSFSTQQNS
401: LISAPNNNVV VLEGHPQATP PGFPGHQINK RLEHWSNAVS SSTHPPPPAH NSNSINHQFD VSPLPHSRPD PLEWNNVSSS YSIPFCDSAN TLSSPALDTT
501: NPRAFCRNTD FDSNTNVQPG VFYGPSTDAM ALLSSSNPKE GFVVGQQKLQ SGGFMVADAG SLDDIVNSTM KQEQSQGDLS GGDLGYGGFS SLRTCI

Arabidopsis Description

ARR12Two-component response regulator ARR12 [Source:UniProtKB/Swiss-Prot;Acc:P62598]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.