Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d011785_P001 | Maize | nucleus | 68.99 | 81.28 |
| Os01t0971800-00 | Rice | nucleus | 68.22 | 73.95 |
| TraesCS3D01G531900.1 | Wheat | nucleus | 62.79 | 57.65 |
| TraesCS3B01G594300.1 | Wheat | nucleus | 63.57 | 57.14 |
| HORVU3Hr1G114970.1 | Barley | nucleus | 60.08 | 56.57 |
| TraesCS3A01G526600.1 | Wheat | nucleus | 62.02 | 56.14 |
| GSMUA_Achr5P07060_001 | Banana | nucleus | 46.12 | 51.97 |
| Solyc06g005680.2.1 | Tomato | nucleus | 49.61 | 48.12 |
| GSMUA_Achr10P... | Banana | nucleus | 51.16 | 47.31 |
| VIT_06s0004g05120.t01 | Wine grape | nucleus | 54.26 | 45.02 |
| PGSC0003DMT400005490 | Potato | nucleus | 51.94 | 44.37 |
| CDX82988 | Canola | nucleus | 44.19 | 44.02 |
| CDX68392 | Canola | nucleus | 44.19 | 43.51 |
| KRH24748 | Soybean | nucleus | 51.55 | 43.46 |
| CDY61256 | Canola | nucleus | 45.35 | 42.7 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.0 | 42.3 |
| KRH29751 | Soybean | nucleus | 52.71 | 42.11 |
| Bra033809.1-P | Field mustard | nucleus | 45.35 | 41.05 |
| CDX99104 | Canola | nucleus | 45.74 | 40.69 |
| Bra018204.1-P | Field mustard | nucleus | 47.67 | 40.46 |
| AT5G59570.2 | Thale cress | nucleus | 46.51 | 40.27 |
| PGSC0003DMT400077979 | Potato | nucleus | 48.45 | 39.81 |
| KRH76596 | Soybean | mitochondrion | 18.22 | 38.84 |
| Solyc06g076350.2.1 | Tomato | nucleus | 47.67 | 38.2 |
| AT3G46640.3 | Thale cress | nucleus | 45.74 | 36.42 |
| Zm00001d010280_P001 | Maize | nucleus | 34.88 | 30.1 |
| Zm00001d038191_P001 | Maize | nucleus | 34.88 | 28.85 |
| Zm00001d042892_P001 | Maize | nucleus | 31.4 | 26.64 |
| Zm00001d032784_P001 | Maize | nucleus | 18.22 | 13.95 |
| Zm00001d036802_P001 | Maize | nucleus | 17.83 | 11.86 |
| Zm00001d015521_P001 | Maize | nucleus | 25.58 | 10.46 |
| Zm00001d048046_P001 | Maize | nucleus | 25.19 | 9.48 |
| Zm00001d028265_P002 | Maize | nucleus | 24.81 | 9.14 |
| Zm00001d045112_P001 | Maize | nucleus | 23.64 | 9.12 |
| Zm00001d012128_P001 | Maize | nucleus | 20.54 | 8.79 |
| Zm00001d042463_P001 | Maize | nucleus | 20.16 | 8.46 |
| Zm00001d046755_P001 | Maize | nucleus | 18.6 | 7.15 |
| Zm00001d018380_P001 | Maize | nucleus | 16.28 | 6.82 |
| Zm00001d036803_P001 | Maize | cytosol | 1.94 | 4.72 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:27.1.6.3.1 | UniProt:A0A1D6N097 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | ProteinID:ONM34211.1 | PFAM:PF00249 |
| PFscan:PS51294 | PANTHER:PTHR31442 | PANTHER:PTHR31442:SF12 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| UniParc:UPI0002261E03 | EnsemblPlantsGene:Zm00001d041960 | EnsemblPlants:Zm00001d041960_P001 | EnsemblPlants:Zm00001d041960_T001 | SEG:seg | : |
Description
Transcription factor LUX
Coordinates
chr3:+:145899089..145899865
Molecular Weight (calculated)
27425.1 Da
IEP (calculated)
7.092
GRAVY (calculated)
-0.508
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEAVDDYE LHMVCYGGGG GGSEDERVME WESGLPGADE LTPLSQPLVP AGLAAAFRIP PEAGRTLLDV HRASAATVSR LRRAPPPSSS GSGGSSSFAP
101: FHPAARGDEG ADSSAAGGGA AATTNGNNNM SSSSKRPRLV WTPQLHKRFV DVVAHLGMKN AVPKTIMQLM NVEGLTRENV ASHLQKYRLY VKRMQGLSDE
201: GPSPSDHIFA STPVPQSLVH EVPMYGTMAS GGQAYHNHNG MGGGGYQYQY HHYHHAHK
101: FHPAARGDEG ADSSAAGGGA AATTNGNNNM SSSSKRPRLV WTPQLHKRFV DVVAHLGMKN AVPKTIMQLM NVEGLTRENV ASHLQKYRLY VKRMQGLSDE
201: GPSPSDHIFA STPVPQSLVH EVPMYGTMAS GGQAYHNHNG MGGGGYQYQY HHYHHAHK
001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGSWCLQNFL
301: SFAEFSTAKS QIASVQERII QSIM
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGSWCLQNFL
301: SFAEFSTAKS QIASVQERII QSIM
Arabidopsis Description
PCL1Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J959]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.