Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G526600.1 | Wheat | nucleus | 97.51 | 96.14 |
| TraesCS3B01G594300.1 | Wheat | nucleus | 94.66 | 92.68 |
| HORVU3Hr1G114970.1 | Barley | nucleus | 88.97 | 91.24 |
| Os01t0971800-00 | Rice | nucleus | 58.01 | 68.49 |
| Zm00001d011785_P001 | Maize | nucleus | 49.11 | 63.01 |
| Zm00001d041960_P001 | Maize | nucleus | 57.65 | 62.79 |
| GSMUA_Achr5P07060_001 | Banana | nucleus | 44.13 | 54.15 |
| GSMUA_Achr10P... | Banana | nucleus | 48.04 | 48.39 |
| Solyc06g005680.2.1 | Tomato | nucleus | 45.2 | 47.74 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.82 | 45.9 |
| CDX68392 | Canola | nucleus | 42.7 | 45.8 |
| VIT_06s0004g05120.t01 | Wine grape | nucleus | 50.53 | 45.66 |
| CDY61256 | Canola | nucleus | 44.13 | 45.26 |
| CDX82988 | Canola | nucleus | 41.64 | 45.17 |
| PGSC0003DMT400005490 | Potato | nucleus | 47.69 | 44.37 |
| KRH24748 | Soybean | nucleus | 46.62 | 42.81 |
| CDX99104 | Canola | nucleus | 43.77 | 42.41 |
| Bra033809.1-P | Field mustard | nucleus | 42.7 | 42.11 |
| KRH29751 | Soybean | nucleus | 47.33 | 41.18 |
| Bra018204.1-P | Field mustard | nucleus | 44.13 | 40.79 |
| KRH76596 | Soybean | mitochondrion | 17.44 | 40.5 |
| AT5G59570.2 | Thale cress | nucleus | 42.7 | 40.27 |
| PGSC0003DMT400077979 | Potato | nucleus | 44.84 | 40.13 |
| Solyc06g076350.2.1 | Tomato | nucleus | 43.77 | 38.2 |
| AT3G46640.3 | Thale cress | nucleus | 42.35 | 36.73 |
| TraesCS3D01G355500.1 | Wheat | nucleus, plastid | 28.83 | 35.68 |
| TraesCS1D01G257700.1 | Wheat | nucleus | 34.88 | 31.72 |
| TraesCS6D01G135500.3 | Wheat | nucleus | 22.78 | 9.92 |
| TraesCS4D01G239900.1 | Wheat | nucleus | 23.13 | 9.5 |
| TraesCS7D01G148000.1 | Wheat | nucleus | 20.28 | 9.48 |
| TraesCS3D01G384500.2 | Wheat | nucleus | 20.64 | 9.31 |
| TraesCS6D01G342200.1 | Wheat | nucleus | 22.06 | 9.19 |
| TraesCS7D01G489600.1 | Wheat | nucleus | 16.37 | 9.16 |
| TraesCS7D01G499600.1 | Wheat | nucleus | 15.3 | 8.67 |
| TraesCS7D01G148200.1 | Wheat | nucleus | 20.28 | 8.65 |
| TraesCS7D01G525900.1 | Wheat | nucleus | 16.73 | 8.12 |
| TraesCS7D01G500600.1 | Wheat | nucleus | 16.37 | 8.06 |
| TraesCS7D01G499700.1 | Wheat | cytosol | 2.49 | 6.54 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G531900.1 | EnsemblPlantsGene:TraesCS3D01G531900 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | InterPro:SANT/Myb |
| PANTHER:PTHR31442 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| MapMan:27.1.6.3.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:607922801..607923646
Molecular Weight (calculated)
29269.0 Da
IEP (calculated)
7.395
GRAVY (calculated)
-0.514
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEAGGYDF DFGGGGGGYG GYDGRVTEWE TGLPGCDELT PLSQPLVPPG LAAAFRIPPE PGRTLLDVHH ASSATVSRLR SASSGNGHAG TGANGASFPS
101: FPGKGAAAGD DSGNRDNNSA ESAGEKSAAA KRARLVWTPQ LHKRFVEVVA HLGIKSAVPK TIMQLMNVEG LTRENVASHL QKYRLYVKRM QGLSNEGPSA
201: SDHIFASTPV PPSLREPQVP HAAAMAPAMY HHHPAPMGGV AAGHGGYYQQ QHSGHAVYNG YGGHGHGGGV SSYPHYHHGD Q
101: FPGKGAAAGD DSGNRDNNSA ESAGEKSAAA KRARLVWTPQ LHKRFVEVVA HLGIKSAVPK TIMQLMNVEG LTRENVASHL QKYRLYVKRM QGLSNEGPSA
201: SDHIFASTPV PPSLREPQVP HAAAMAPAMY HHHPAPMGGV AAGHGGYYQQ QHSGHAVYNG YGGHGHGGGV SSYPHYHHGD Q
001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGSWCLQNFL
301: SFAEFSTAKS QIASVQERII QSIM
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGSWCLQNFL
301: SFAEFSTAKS QIASVQERII QSIM
Arabidopsis Description
PCL1Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J959]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.