Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400077979 | Potato | nucleus | 91.93 | 94.27 |
| Solyc06g005680.2.1 | Tomato | nucleus | 49.38 | 59.77 |
| VIT_06s0004g05120.t01 | Wine grape | nucleus | 54.04 | 55.95 |
| GSMUA_Achr5P07060_001 | Banana | nucleus | 38.51 | 54.15 |
| KRH24748 | Soybean | nucleus | 47.83 | 50.33 |
| Zm00001d011785_P001 | Maize | nucleus | 34.16 | 50.23 |
| Os01t0971800-00 | Rice | nucleus | 36.34 | 49.16 |
| CDX99104 | Canola | nucleus | 44.1 | 48.97 |
| Bra018204.1-P | Field mustard | nucleus | 45.96 | 48.68 |
| CDX82988 | Canola | nucleus | 39.13 | 48.65 |
| GSMUA_Achr10P... | Banana | nucleus | 41.93 | 48.39 |
| CDY61256 | Canola | nucleus | 40.99 | 48.18 |
| CDX68392 | Canola | nucleus | 39.13 | 48.09 |
| KRH29751 | Soybean | nucleus | 47.83 | 47.68 |
| Zm00001d041960_P001 | Maize | nucleus | 38.2 | 47.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.03 | 47.54 |
| AT5G59570.2 | Thale cress | nucleus | 43.79 | 47.32 |
| Bra033809.1-P | Field mustard | nucleus | 41.3 | 46.67 |
| HORVU3Hr1G114970.1 | Barley | nucleus | 37.58 | 44.16 |
| AT3G46640.3 | Thale cress | nucleus | 44.1 | 43.83 |
| TraesCS3D01G531900.1 | Wheat | nucleus | 38.2 | 43.77 |
| TraesCS3B01G594300.1 | Wheat | nucleus | 38.82 | 43.55 |
| TraesCS3A01G526600.1 | Wheat | nucleus | 38.51 | 43.51 |
| Solyc10g080960.1.1 | Tomato | nucleus | 28.26 | 34.21 |
| Solyc10g078310.1.1 | Tomato | nucleus | 29.5 | 32.76 |
| Solyc11g072330.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 13.35 | 13.03 |
| Solyc12g099380.1.1 | Tomato | nucleus | 21.43 | 12.43 |
| Solyc07g005140.2.1 | Tomato | nucleus | 23.91 | 11.58 |
| Solyc04g008050.2.1 | Tomato | nucleus | 22.98 | 11.31 |
| Solyc05g054390.2.1 | Tomato | nucleus | 22.98 | 11.16 |
| Solyc12g010330.1.1 | Tomato | nucleus | 23.6 | 10.73 |
| Solyc07g019550.1.1 | Tomato | nucleus | 12.11 | 10.63 |
| Solyc01g091810.1.1 | Tomato | nucleus | 18.94 | 10.55 |
| Solyc01g065540.2.1 | Tomato | nucleus | 21.74 | 10.34 |
| Solyc05g014260.2.1 | Tomato | nucleus | 18.01 | 9.98 |
| Solyc03g026250.1.1 | Tomato | nucleus | 10.25 | 9.91 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:27.1.6.3.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007623 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0010468 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:K4C9Z5 | InterPro:Myb_dom |
| InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31442 | PANTHER:PTHR31442:SF12 | InterPro:SANT/Myb |
| SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc06g076350.2 | EnsemblPlants:Solyc06g076350.2.1 | TIGRFAMs:TIGR01557 | UniParc:UPI0002767112 | SEG:seg |
Description
Transcription factor BOA [Source:Projected from Arabidopsis thaliana (AT5G59570) UniProtKB/Swiss-Prot;Acc:Q9LTH4]
Coordinates
chr6:+:47438745..47441401
Molecular Weight (calculated)
36185.5 Da
IEP (calculated)
5.555
GRAVY (calculated)
-0.679
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEVSLTDY ESSGGNDDRL LWEIGLPDVD DLTPLNMQLI PSELAAAFRI SPELSKTMTD VNRASQNTFS SLQRWHSQDM ASMNNSNFKT FSYERSREET
101: VTERDETDLI REGSDSRKLR RVESGGTEEA DSSLCNENFA DDSSAKTLKR PRLVWTPQLH KRFIEVVAHL GIKGAVPKTI MQLMNVEGLT RENVASHLQK
201: YRLYTKRMQP NEGPSSSDHL LTSTPATEIM RESSESGHLR NTNGHMAMPT LMPYQQQMVA MPMMGMPNGG HVGMPVGYGG GPPLGFHHHY NVVQQRDWSG
301: NNFGYYHPVA SNDKYVDLDD VI
101: VTERDETDLI REGSDSRKLR RVESGGTEEA DSSLCNENFA DDSSAKTLKR PRLVWTPQLH KRFIEVVAHL GIKGAVPKTI MQLMNVEGLT RENVASHLQK
201: YRLYTKRMQP NEGPSSSDHL LTSTPATEIM RESSESGHLR NTNGHMAMPT LMPYQQQMVA MPMMGMPNGG HVGMPVGYGG GPPLGFHHHY NVVQQRDWSG
301: NNFGYYHPVA SNDKYVDLDD VI
001: MGEEVQMSDY DVSGDGDRVS EWEMGLPSDE DLASLSYSLI PPNLAMAFSI TPERSRTIQD VNRASETTLS SLRGGSSGPN TSSSNNNVEE EDRVGSSSPG
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301: MQQNKFGSMA SYPSVGGGSA NEN
101: SDSKKQKTSN GDGDDGGGVD PDSAMAAEEG DSGTEDLSGK TLKRPRLVWT PQLHKRFVDV VAHLGIKNAV PKTIMQLMNV EGLTRENVAS HLQKYRLYLK
201: RMQGLTNEGP SASDKLFSST PVPPQSFQDI GGGGGSSGNV GVPIPGAYGT QQMMQMPVYA HHMGMQGYHH QNHNHDPYHQ NHRHHHGAGG NGAFESNPYM
301: MQQNKFGSMA SYPSVGGGSA NEN
Arabidopsis Description
PCL1Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J959]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.