Factsheet for Solyc01g065540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065835	Potato	nucleus	94.53	94.81
CDY52720	Canola	nucleus	21.27	77.01
Solyc05g054390.2.1	Tomato	nucleus	72.82	74.36
Bra001641.1-P	Field mustard	cytosol	15.66	71.62
CDY54630	Canola	cytosol	16.1	70.32
CDY54632	Canola	cytosol	15.21	69.59
CDX82391	Canola	cytosol	15.07	68.92
KRH12005	Soybean	nucleus	60.56	61.01
KRH37035	Soybean	nucleus	59.82	60.18
CDX75892	Canola	nucleus	38.55	57.74
CDX92102	Canola	nucleus	42.54	57.37
CDX95898	Canola	nucleus	42.69	57.23
Bra033527.1-P	Field mustard	nucleus	50.37	53.87
Bra012743.1-P	Field mustard	nucleus	46.09	52.7
CDY09718	Canola	nucleus	46.53	52.41
CDX90546	Canola	nucleus	45.2	51.86
CDX82389	Canola	nucleus	44.46	49.43
Bra022183.1-P	Field mustard	nucleus	49.63	49.34
AT3G16857.2	Thale cress	nucleus	49.93	48.99
Bra001643.1-P	Field mustard	nucleus	46.53	48.46
CDY34423	Canola	nucleus	33.97	48.42
CDY32209	Canola	nucleus	33.38	47.88
Solyc12g099380.1.1	Tomato	nucleus	35.16	42.88
GSMUA_Achr5P16510_001	Banana	cytosol, nucleus, plastid	12.41	38.89
Solyc04g008050.2.1	Tomato	nucleus	36.48	37.77
Solyc12g010330.1.1	Tomato	nucleus	32.94	31.5
Solyc05g014260.2.1	Tomato	nucleus	26.59	30.98
Solyc07g005140.2.1	Tomato	nucleus	30.13	30.68
Solyc11g072330.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	14.03	28.79
Solyc10g080960.1.1	Tomato	nucleus	11.23	28.57
Solyc03g026250.1.1	Tomato	nucleus	13.44	27.33
Solyc10g078310.1.1	Tomato	nucleus	11.67	27.24
Solyc06g005680.2.1	Tomato	nucleus	10.49	26.69
Solyc07g019550.1.1	Tomato	nucleus	12.85	23.71
Solyc01g091810.1.1	Tomato	nucleus	19.35	22.66
Solyc06g076350.2.1	Tomato	nucleus	10.34	21.74

Protein Annotations

Gene3D:1.10.10.60	MapMan:11.4.2.4	MapMan:15.5.23	Gene3D:3.40.50.2300	InterPro:CheY-like_superfamily	GO:GO:0000160
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR001789	InterPro:IPR017930	UniProt:K4AWF8	InterPro:Myb_dom	InterPro:Myb_dom_plants
PFAM:PF00072	PFAM:PF00249	PIRSF:PIRSF036392	PFscan:PS50110	PFscan:PS51294	PANTHER:PTHR43874
PANTHER:PTHR43874:SF23	InterPro:Response_reg_B-typ_pln	InterPro:SANT/Myb	SMART:SM00448	SUPFAM:SSF46689	SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiver	EnsemblPlantsGene:Solyc01g065540.2	EnsemblPlants:Solyc01g065540.2.1	TIGRFAMs:TIGR01557	UniParc:UPI0002762738	SEG:seg

Description

Two-component response regulator [Source:UniProtKB/TrEMBL;Acc:K4AWF8]

Coordinates

chr1:-:71812977..71817156

Molecular Weight (calculated)

74822.0 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.596

Length

677 amino acids

Sequence
(BLAST)

001: MNIGSGSVLS STGSWKSGDV VPDQFPVGLR VLVVDDDPTC LKILEKMLKN CHYEVTKCNR AEVALSHLRE NKNGFDIVIS DVHMPDMDGF KLLEHIGLEM
101: DLPVIMMSAD DSKDVVMKGV THGAYDYLIK PVRIEALKNI WQHVVRKKKH EWRDNNFDQS GSVEEGDRQQ KQSEDVDYSS SANEGNWKNS KKRKEEDDEG
201: EERDDTSSLK KPRVVWSVEL HQQFVQAVHQ LGIDKAVPKK ILELMNVPGL TRENVASHLQ KYRLYLRRLS GVSQHQNGLN NSFMGRPDAT FGTISSLNGL
301: DLQAIAAAGQ IPAQSLATLQ AAALGRSASK SAISMPLVDQ RNLFSFENSQ VRFPEGQQQL NNSNKQIDLL HGIPTTMEPK QLANLHHPSQ SFMGMNMQVN
401: NSMAQHNNSV IMRMSQSQPR AQMLSGANNG SQISRLPFSR QQSLSSEGIP GVVLAQSRTV DNARASVYNP VSQASSMVDF SVNQSKDLQN YNFSLGSNSA
501: GMSTLTNRGM LQEEVNSDIK GSRGFPSNYD IFNDLHQQPK PQNWGLQNVG SSFDSSHHPS IQGSQGVPSQ LLMQQGISST HNNGQNRNGP IGKPMYTNGE
601: ESGHTNLMGG PQLNSVSRNT LAVKAERFLD ADYQSTNFPE QFGQDDLMSA FLKQQGSVGP VETEFGFDGY TLDNLPV

Best Arabidopsis Sequence Match ( AT3G16857.2 )
(BLAST)

001: MMNPSHGRGL GSAGGSSSGR NQGGGGETVV EMFPSGLRVL VVDDDPTCLM ILERMLRTCL YEVTKCNRAE MALSLLRKNK HGFDIVISDV HMPDMDGFKL
101: LEHVGLEMDL PVIMMSADDS KSVVLKGVTH GAVDYLIKPV RMEALKNIWQ HVVRKRRSEW SVPEHSGSIE ETGERQQQQH RGGGGGAAVS GGEDAVDDNS
201: SSVNEGNNWR SSSRKRKDEE GEEQGDDKDE DASNLKKPRV VWSVELHQQF VAAVNQLGVE KAVPKKILEL MNVPGLTREN VASHLQKYRI YLRRLGGVSQ
301: HQGNLNNSFM TGQDASFGPL STLNGFDLQA LAVTGQLPAQ SLAQLQAAGL GRPAMVSKSG LPVSSIVDER SIFSFDNTKT RFGEGLGHHG QQPQQQPQMN
401: LLHGVPTGLQ QQLPMGNRMS IQQQIAAVRA GNSVQNNGML MPLAGQQSLP RGPPPMLTSS QSSIRQPMLS NRISERSGFS GRNNIPESSR VLPTSYTNLT
501: TQHSSSSMPY NNFQPELPVN SFPLASAPGI SVPVRKATSY QEEVNSSEAG FTTPSYDMFT TRQNDWDLRN IGIAFDSHQD SESAAFSASE AYSSSSMSRH
601: NTTVAATEHG RNHQQPPSGM VQHHQVYADG NGGSVRVKSE RVATDTATMA FHEQYSNQED LMSALLKQEG IAPVDGEFDF DAYSIDNIPV

Arabidopsis Description

ARR1Two-component response regulator ARR1 [Source:UniProtKB/Swiss-Prot;Acc:Q940D0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.