Factsheet for Solyc10g080960.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072213	Potato	nucleus	93.23	93.23
Solyc10g078310.1.1	Tomato	nucleus	81.2	74.48
CDX98816	Canola	nucleus	59.77	60.92
Bra009087.1-P	Field mustard	nucleus	60.53	60.3
AT5G05090.1	Thale cress	nucleus	59.77	59.77
GSMUA_Achr11P...	Banana	nucleus	59.02	51.82
GSMUA_Achr8P05880_001	Banana	nucleus	59.77	50.48
GSMUA_Achr5P27500_001	Banana	nucleus	53.01	49.65
Zm00001d010280_P001	Maize	nucleus	52.26	46.49
HORVU1Hr1G064950.1	Barley	nucleus	53.01	46.23
TraesCS1B01G268900.1	Wheat	nucleus	52.63	45.45
TraesCS1D01G257700.1	Wheat	nucleus	52.63	45.31
Zm00001d038191_P001	Maize	nucleus	52.63	44.87
TraesCS1A01G258400.1	Wheat	nucleus	52.63	44.87
Solyc06g005680.2.1	Tomato	nucleus	38.35	38.35
Os05t0412000-00	Rice	nucleus	53.76	34.62
Solyc06g076350.2.1	Tomato	nucleus	34.21	28.26
Solyc11g072330.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	15.79	12.73
Solyc05g054390.2.1	Tomato	nucleus	29.32	11.76
Solyc03g026250.1.1	Tomato	nucleus	14.66	11.71
Solyc01g065540.2.1	Tomato	nucleus	28.57	11.23
Solyc07g019550.1.1	Tomato	nucleus	15.04	10.9
Solyc07g005140.2.1	Tomato	nucleus	26.69	10.68
Solyc12g010330.1.1	Tomato	nucleus	27.07	10.17
Solyc04g008050.2.1	Tomato	nucleus	24.81	10.09
Solyc05g014260.2.1	Tomato	nucleus	21.05	9.64
Solyc12g099380.1.1	Tomato	nucleus	19.17	9.19
Solyc01g091810.1.1	Tomato	nucleus	18.8	8.65

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K4D2Y3	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR31442	PANTHER:PTHR31442:SF1	InterPro:SANT/Myb	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc10g080960.1
EnsemblPlants:Solyc10g080960.1.1	TIGRFAMs:TIGR01557	UniParc:UPI000276977A	:	:	:

Description

No Description!

Coordinates

chr10:+:62139569..62140369

Molecular Weight (calculated)

29197.6 Da

IEP (calculated)

8.909

GRAVY (calculated)

-0.466

Length

266 amino acids

Sequence
(BLAST)

001: MREEDSNWFA KWEEELPSPK ELMPLSQTLI TPNLAIAFDI QNPNTPNPKI TPLVHTLSSA EFDSNSAELG GMAGSSGVGD EPARTLKRPR LVWTPQLHKR
101: FVDAVAQLGI KNAVPKTIMQ LMSVDGLTRE NVASHLQKYR LYLKRMQGLS HSGSVSGAGV DPATDHLFAS SPVPAHFLHP GRGNSDHYMP FVPMSAVVGH
201: APQFQQQYRH FGSPTNGQFE VPFLPRQSQQ PAQRMGTSVH SSSPALESAT TANGRKVLTL FPNRDD

Best Arabidopsis Sequence Match ( AT3G10760.1 )
(BLAST)

001: MREDDSDWFA RWEEELPSPE ELMPISQSLI SPDLALAFDI RTPNHGNGNS NQPHHHHHHQ TTPPTPSQLQ LPSSQANSSA EFAADSADLG SGGAAGDEPA
101: RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA VPKTIMQLMS VDGLTRENVA SHLQKYRLYL KRMQGLSSGG GAGSDPATDR LFASSPVPAH FLHPNRVPSS
201: DHFMPSFVPI ATLQQQQQMA AAAAAAAAAN PHLQPPQFHR QIAAAHFGSP TNGGFSSPTS NGQFGSPTSN GFGSPTTNGK FDPSFLAVRQ TQQQPIQRMS
301: TPSLHSPVSN YVEDLESANA NGGRTVLTLF PTRDD

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SG82]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.